Rh2AG563700

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
79319689 .. 79333275
13587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG563700.1

Sequence Viewer

Length: 594 bp
ATGTTTCAAAAATTCAGCTACAAGGAGATAAAGAAGGCGACAAAAAATTTCAGTACTACCATTGGACAAGGGGGATTTGGAACTGTGTACAAAGCTCACTTTAGTAATGGTTTAGTGGCAGCAGTGAAGCAGATGAATAAAGTTTCCGAGCAGGGGGAGCATGAGTTCTGCAGAGAGATAGTGCTTCTTGCCAGGTTGCATCATCGGCATCTTGTTTCTCTTAGAGGTTTCTGCACTGAGAAACATAAGAGTTGGCTTATAATTGTGCCAGTAGCTCCTATTGTGGTGCGAAATGAAGATTTGACATGGAAAGATGTTTGCCATTTCCTATTGAAAGATATTCATTTTAAGTCCTTGTTTCAGGTTACGTACCATTTCTTTCACTGGAAGAAGGGAACACCATTTGCTCATGACCAAGCTCGGCTTGCGGTGGAGTTCATTTTTTGCTCAGCATGTATTCGCTTTGTTGAGTGCACAAGAGGGACTTACTGGGTTGTTAGCCAGGTTGAATATCCCTCATTGGTTGATCTGCGGGGACTTCTTCTGGATTTGGTTGCTCAGCTATTAGGTGCCTTATCTCGCATCAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

197

Amino Acids

22.73

Weight (kDa)

9.37

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 17 - 88 1.6e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 19 - 88 2.8e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 569
AciI CCGC 2 cut(s) 428, 532
AcsI RAATTY 2 cut(s) 11, 46
AfaI GTAC 3 cut(s) 55, 89, 371
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 3 cut(s) 8, 334, 509
AjnI CCWGG 2 cut(s) 191, 501
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 5 cut(s) 18, 95, 275, 419, 562
AluI AGCT 5 cut(s) 18, 95, 275, 419, 562
Alw21I GWGCWC 1 cut(s) 476
Alw44I GTGCAC 1 cut(s) 472
ApaLI GTGCAC 1 cut(s) 472
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 2 cut(s) 11, 46
BaeGI GKGCMC 1 cut(s) 476
BanI GGYRCC 1 cut(s) 569
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 193, 503
BfmI CTRYAG 1 cut(s) 169
BisI GCNGC 1 cut(s) 120
BlpI GCTNAGC 2 cut(s) 448, 558
BlsI GCNGC 1 cut(s) 121
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 193, 503
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 2 cut(s) 193, 503
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 208, 217
BmuI ACTGGG 1 cut(s) 499
Bpu1102I GCTNAGC 2 cut(s) 448, 558
BsaAI YACGTR 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 3 cut(s) 269, 389, 494
BseBI CCWGG 2 cut(s) 193, 503
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 3 cut(s) 228, 462, 572
BseNI ACTGG 3 cut(s) 269, 389, 494
BseSI GKGCMC 1 cut(s) 476
BseXI GCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 476
BslFI GGGAC 2 cut(s) 496, 549
BslI CCNNNNNNNGG 1 cut(s) 153
BsmFI GGGAC 2 cut(s) 496, 549
Bsp1286I GDGCHC 1 cut(s) 476
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 1 cut(s) 526
Bsp1720I GCTNAGC 2 cut(s) 448, 558
BspACI CCGC 2 cut(s) 428, 532
BspCNI CTCAG 3 cut(s) 229, 461, 571
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 1 cut(s) 571
BspMAI CTGCAG 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 569
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 3 cut(s) 269, 389, 494
BssMI GATC 1 cut(s) 526
Bst2UI CCWGG 2 cut(s) 193, 503
Bst4CI ACNGT 1 cut(s) 85
BstAUI TGTACA 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 4 cut(s) 221, 237, 448, 558
BstKTI GATC 1 cut(s) 529
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 3 cut(s) 157, 205, 425
BstNI CCWGG 2 cut(s) 193, 503
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 2 cut(s) 191, 501
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 476
BstSNI TACGTA 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 3 cut(s) 129, 234, 382
Cac8I GCNNGC 1 cut(s) 426
CciI TCATGA 1 cut(s) 409
Csp6I GTAC 3 cut(s) 54, 88, 370
CviAII CATG 4 cut(s) 161, 306, 410, 453
CviJI RGCY 8 cut(s) 18, 95, 256, 275, 419, 424, 501, 562
CviKI_1 RGCY 8 cut(s) 18, 95, 256, 275, 419, 424, 501, 562
CviQI GTAC 3 cut(s) 54, 88, 370
DdeI CTNAG 4 cut(s) 221, 237, 448, 558
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
Eco105I TACGTA 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 191, 501
FaeI CATG 4 cut(s) 164, 309, 413, 456
FaiI YATR 6 cut(s) 162, 246, 260, 307, 411, 454
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 469, 501
FaqI GGGAC 2 cut(s) 496, 549
FatI CATG 4 cut(s) 160, 305, 409, 452
FauI CCCGC 1 cut(s) 525
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
Hin1II CATG 4 cut(s) 164, 309, 413, 456
Hpy166II GTNNAC 2 cut(s) 88, 474
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 410, 545
Hpy8I GTNNAC 2 cut(s) 88, 474
HpyAV CCTTC 2 cut(s) 28, 385
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 4 cut(s) 171, 199, 234, 474
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 205, 425
HpyF3I CTNAG 4 cut(s) 221, 237, 448, 558
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 4 cut(s) 164, 309, 413, 456
Kzo9I GATC 1 cut(s) 526
LmnI GCTCC 2 cut(s) 157, 280
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 2 cut(s) 208, 217
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 364
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 3 cut(s) 308, 400, 533
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 3 cut(s) 11, 46, 261
MnlI CCTC 3 cut(s) 218, 473, 526
MseI TTAA 2 cut(s) 348, 592
MspR9I CCNGG 2 cut(s) 193, 503
MvaI CCWGG 2 cut(s) 193, 503
MwoI GCNNNNNNNGC 3 cut(s) 157, 205, 425
NdeII GATC 1 cut(s) 526
NlaIII CATG 4 cut(s) 164, 309, 413, 456
NlaIV GGNNCC 1 cut(s) 571
NmeAIII GCCGAG 1 cut(s) 400
NspI RCATGY 1 cut(s) 456
PagI TCATGA 1 cut(s) 409
PkrI GCNGC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 369
PsiI TTATAA 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 191, 501
PspGI CCWGG 2 cut(s) 191, 501
PspN4I GGNNCC 1 cut(s) 571
PstI CTGCAG 1 cut(s) 173
RsaI GTAC 3 cut(s) 55, 89, 371
RsaNI GTAC 3 cut(s) 54, 88, 370
SaqAI TTAA 2 cut(s) 348, 592
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 526
ScaI AGTACT 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 193, 503
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 2 cut(s) 208, 217
SfcI CTRYAG 1 cut(s) 169
SnaBI TACGTA 1 cut(s) 369
Sse9I AATT 3 cut(s) 11, 46, 261
SsiI CCGC 2 cut(s) 428, 532
StyD4I CCNGG 2 cut(s) 191, 501
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 371
TasI AATT 3 cut(s) 11, 46, 261
TatI WGTACW 2 cut(s) 53, 87
Tru1I TTAA 2 cut(s) 348, 592
Tru9I TTAA 2 cut(s) 348, 592
TscAI CASTG 3 cut(s) 129, 241, 389
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 149, 309, 332, 427
TspRI CASTG 3 cut(s) 129, 241, 389
VneI GTGCAC 1 cut(s) 472
XapI RAATTY 2 cut(s) 11, 46
XceI RCATGY 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.