Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8468953.1

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Reverse (-)

345 .. 1514

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8468953.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgcaggagtatctccatttctattgtgatcctcctctttgccatagagatatcaagtccagcaatatcttactggatgaaaattttgtggccaaggttgcagactttggccttgtacatgcatcaaaagatggttcagttttctttgaaccggtaaatactgatatccggggaactccaggttatatggatcccgagtatgtcgttactcaggagttaacagagaaaagtgatgtatacagctatggtgtcctattgttggagatagtgactgggagacgagcgatacaagacaacaggaatttggttgaatggtcacaaaaatacatagaatcagaatcaagggtacctgatttagtcgatcccagtataagggactcatttaacttggatcagcttcaaacactcatttctgttgtcagctggtgcacccagagagaaggccaggacaggccttctattaaacaggtgcttaggcttttgtatgagagttcggacccgatgcatagtggatttatagcatctgtagacgacgaagagtacggagagacagaaggaagaggaaggaacagtaaaggcaagatgcataggaatgacatgatctgtcacagtggggatgggagatatctggcttcttcttcaagtacatccaggtcatattgtagcagaagcttcttgcttgaaactgggtctccacaatcccctccgaatattttttctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

27.28

Weight (kDa)

4.93

Isoelectric Point (pI)

59.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	346
AccI	GTMKAC	2 cut(s)	237, 528
AclWI	GGATC	5 cut(s)	23, 185, 198, 356, 399
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	82, 301
AfaI	GTAC	4 cut(s)	117, 348, 542, 646
AfiI	CCNNNNNNNGG	2 cut(s)	259, 372
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	149, 311, 401, 642, 683
AjnI	CCWGG	3 cut(s)	178, 444, 650
AluBI	AGCT	4 cut(s)	243, 397, 423, 672
AluI	AGCT	4 cut(s)	243, 397, 423, 672
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	3 cut(s)	271, 542, 696
Alw44I	GTGCAC	1 cut(s)	427
AlwI	GGATC	5 cut(s)	23, 185, 198, 356, 399
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	4 cut(s)	90, 109, 442, 452
ApaLI	GTGCAC	1 cut(s)	427
ApoI	RAATTY	2 cut(s)	82, 301
AsiGI	ACCGGT	1 cut(s)	151
Asp718I	GGTACC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	496
BaeGI	GKGCMC	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	431
BccI	CCATC	2 cut(s)	125, 611
BciT130I	CCWGG	3 cut(s)	180, 446, 652
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	271, 542, 696
BfmI	CTRYAG	1 cut(s)	525
Bme1390I	CCNGG	4 cut(s)	170, 180, 446, 652
Bme18I	GGWCC	1 cut(s)	496
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	3 cut(s)	192, 348, 498
BmrFI	CCNGG	4 cut(s)	170, 180, 446, 652
BmrI	ACTGGG	3 cut(s)	282, 360, 696
BmsI	GCATC	4 cut(s)	131, 492, 530, 573
BmuI	ACTGGG	3 cut(s)	282, 360, 696
BpmI	CTGGAG	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	93, 169
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	676, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 372
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	4 cut(s)	78, 277, 366, 691
BseBI	CCWGG	3 cut(s)	180, 446, 652
BseDI	CCNNGG	2 cut(s)	93, 169
BseGI	GGATG	3 cut(s)	82, 622, 647
BseLI	CCNNNNNNNGG	2 cut(s)	259, 372
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	4 cut(s)	78, 277, 366, 691
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	431
BshFI	GGCC	4 cut(s)	92, 111, 444, 454
BshNI	GGYRCC	1 cut(s)	346
BshTI	ACCGGT	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	152, 169
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	259, 372
BsmAI	GTCTC	3 cut(s)	271, 542, 696
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	4 cut(s)	92, 111, 444, 454
Bso31I	GGTCTC	1 cut(s)	696
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	5 cut(s)	28, 190, 361, 391, 600
BspANI	GGCC	4 cut(s)	92, 111, 444, 454
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	192, 348, 498
BspPI	GGATC	5 cut(s)	23, 185, 198, 356, 399
BspT107I	GGYRCC	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	4 cut(s)	78, 277, 366, 691
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	93, 169
BssMI	GATC	5 cut(s)	28, 190, 361, 391, 600
BssNAI	GTATAC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	93
Bst1107I	GTATAC	1 cut(s)	238
Bst2UI	CCWGG	3 cut(s)	180, 446, 652
Bst4CI	ACNGT	2 cut(s)	572, 611
Bst6I	CTCTTC	2 cut(s)	531, 553
BstAUI	TGTACA	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	210, 473
BstF5I	GGATG	3 cut(s)	82, 622, 647
BstKTI	GATC	5 cut(s)	31, 193, 364, 394, 603
BstMAI	GTCTC	3 cut(s)	271, 542, 696
BstMBI	GATC	5 cut(s)	28, 190, 361, 391, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	3 cut(s)	180, 446, 652
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	4 cut(s)	168, 178, 444, 650
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BstZ17I	GTATAC	1 cut(s)	238
BsuRI	GGCC	4 cut(s)	92, 111, 444, 454
BtsCI	GGATG	3 cut(s)	82, 622, 647
BtsIMutI	CAGTG	1 cut(s)	616
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	496
Csp6I	GTAC	4 cut(s)	116, 347, 541, 645
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	2 cut(s)	119, 598
CviQI	GTAC	4 cut(s)	116, 347, 541, 645
DdeI	CTNAG	2 cut(s)	210, 473
DpnI	GATC	5 cut(s)	30, 192, 363, 393, 602
DpnII	GATC	5 cut(s)	28, 190, 361, 391, 600
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	531, 553
EarI	CTCTTC	2 cut(s)	531, 553
Eco130I	CCWWGG	1 cut(s)	93
Eco147I	AGGCCT	1 cut(s)	454
Eco31I	GGTCTC	1 cut(s)	696
Eco32I	GATATC	3 cut(s)	52, 166, 626
Eco47I	GGWCC	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	194
EcoRII	CCWGG	3 cut(s)	178, 444, 650
EcoRV	GATATC	3 cut(s)	52, 166, 626
EcoT14I	CCWWGG	1 cut(s)	93
EcoT22I	ATGCAT	3 cut(s)	124, 507, 588
ErhI	CCWWGG	1 cut(s)	93
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	2 cut(s)	122, 601
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	118, 597
FblI	GTMKAC	2 cut(s)	237, 528
FokI	GGATG	3 cut(s)	89, 629, 634
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	4 cut(s)	92, 111, 444, 454
HapII	CCGG	2 cut(s)	152, 169
Hin1II	CATG	2 cut(s)	122, 601
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	3 cut(s)	332, 338, 377
HpaI	GTTAAC	1 cut(s)	219
HpaII	CCGG	2 cut(s)	152, 169
Hpy166II	GTNNAC	4 cut(s)	219, 238, 429, 529
Hpy188I	TCNGA	3 cut(s)	337, 496, 708
Hpy188III	TCNNGA	2 cut(s)	194, 212
Hpy8I	GTNNAC	4 cut(s)	219, 238, 429, 529
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	4 cut(s)	434, 465, 548, 558
HpyCH4III	ACNGT	2 cut(s)	572, 611
HpyCH4V	TGCA	6 cut(s)	4, 101, 122, 429, 505, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	210, 473
Hsp92II	CATG	2 cut(s)	122, 601
KpnI	GGTACC	1 cut(s)	350
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	5 cut(s)	28, 190, 361, 391, 600
LweI	GCATC	4 cut(s)	131, 492, 530, 573
MaeIII	GTNAC	4 cut(s)	205, 268, 315, 605
MalI	GATC	5 cut(s)	30, 192, 363, 393, 602
MboI	GATC	5 cut(s)	28, 190, 361, 391, 600
MboII	GAAGA	4 cut(s)	548, 570, 627, 630
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	431
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	82, 301
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	4 cut(s)	42, 45, 554, 714
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	3 cut(s)	124, 507, 588
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	3 cut(s)	218, 384, 462
MslI	CAYNNNNRTG	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	2 cut(s)	152, 169
MspR9I	CCNGG	4 cut(s)	170, 180, 446, 652
MvaI	CCWGG	3 cut(s)	180, 446, 652
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	5 cut(s)	28, 190, 361, 391, 600
NlaIII	CATG	2 cut(s)	122, 601
NlaIV	GGNNCC	3 cut(s)	192, 348, 498
NmuCI	GTSAC	3 cut(s)	268, 315, 605
NsiI	ATGCAT	3 cut(s)	124, 507, 588
NspI	RCATGY	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	332, 338
PinAI	ACCGGT	1 cut(s)	151
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	178, 444, 650
PspGI	CCWGG	3 cut(s)	178, 444, 650
PspN4I	GGNNCC	3 cut(s)	192, 348, 498
PspPI	GGNCC	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	423
RsaI	GTAC	4 cut(s)	117, 348, 542, 646
RsaNI	GTAC	4 cut(s)	116, 347, 541, 645
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	3 cut(s)	218, 384, 462
Sau3AI	GATC	5 cut(s)	28, 190, 361, 391, 600
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	170, 180, 446, 652
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	9 cut(s)	99, 184, 245, 352, 399, 425, 471, 656, 674
SfaNI	GCATC	4 cut(s)	131, 492, 530, 573
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	2 cut(s)	82, 301
SseBI	AGGCCT	1 cut(s)	454
SspI	AATATT	1 cut(s)	712
StuI	AGGCCT	1 cut(s)	454
StyD4I	CCNGG	4 cut(s)	168, 178, 444, 650
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	572, 611
TaqI	TCGA	1 cut(s)	360
TasI	AATT	2 cut(s)	82, 301
TatI	WGTACW	2 cut(s)	115, 644
TfiI	GAWTC	2 cut(s)	332, 338
Tru1I	TTAA	3 cut(s)	218, 384, 462
Tru9I	TTAA	3 cut(s)	218, 384, 462
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	3 cut(s)	268, 315, 605
Tsp45I	GTSAC	3 cut(s)	268, 315, 605
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	616
VneI	GTGCAC	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	2 cut(s)	82, 301
XceI	RCATGY	1 cut(s)	122
XmiI	GTMKAC	2 cut(s)	237, 528
Zsp2I	ATGCAT	3 cut(s)	124, 507, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.