Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008845

Physical Location & Seq

Genomic Coordinates Forward (+)

1815469 .. 1818104

Gene Structure 2636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28438

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCTCAAGAAGCTCGGAGGTGGTGGGAAATCCCAGTCTTCCAAGAGAGGGAAAGAGAGTAAGAGCAATGAGAAAGATCAGATGGCTGCCTTGGTATACAGAACTCCAGAGATGAAGACCTCCATTGTTGAGGAGGTTCAGGGGAAAGTGATGCCTGCAATTGAGAATGGCGACGTGAAACTTGTGATTCACAAGGTTTTTACATTCGAAGAAGCAGCTGAGGCACACAAACTCAAGAAAAGTGGCAATCATATCGGAAAGATATTGCTTCACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

92

Amino Acids

10.1

Weight (kDa)

9.66

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N_2	PF13602	20 - 90	1.4e-10	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02170
rosa_chinensis	RchiOBHm_Chr5g0003051 RchiOBHm_Chr5g0003521
rosa_laevigata	RLG00000031095 RLG00000031097 RLG00000031110
rosa_multiflora	Rmu_co8296325.1_g000001 Rmu_sc0000146.1_g000013 Rmu_sc0004279.1_g000013
rosa_roxburghii	Rroxscaffold_1G00072500
rosa_rugosa	Rorug04G0401800 Rorug04G0402000 Rorug04G0402100
rosa_samantha	Rh5AG024500 Rh5BG027900 Rh5CG027400 Rh5CG033300 Rh5DG027900 Rh6DG004000
rosa_wichuraiana	Rw5G002530 Rw5G002550 Rw5G002620 Rw5G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	48
AjiI	CACGTC	1 cut(s)	175
AluBI	AGCT	2 cut(s)	13, 218
AluI	AGCT	2 cut(s)	13, 218
ApeKI	GCWGC	2 cut(s)	86, 215
AsuHPI	GGTGA	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	30, 122
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	73, 227
BccI	CCATC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BisI	GCNGC	2 cut(s)	87, 216
BlsI	GCNGC	2 cut(s)	88, 217
BmgBI	CACGTC	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	28
BpiI	GAAGAC	2 cut(s)	30, 122
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	73, 227
BslI	CCNNNNNNNGG	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	211
BspT104I	TTCGAA	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	76
BssNAI	GTATAC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	90
Bst1107I	GTATAC	1 cut(s)	97
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 221
BstV1I	GCAGC	2 cut(s)	73, 227
BstV2I	GAAGAC	2 cut(s)	30, 122
BstZ17I	GTATAC	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	156
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviJI	RGCY	3 cut(s)	13, 86, 218
CviKI_1	RGCY	3 cut(s)	13, 86, 218
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaiI	YATR	2 cut(s)	97, 252
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	87, 216
Fsp4HI	GCNGC	2 cut(s)	87, 216
GluI	GCNGC	2 cut(s)	87, 216
GsuI	CTGGAG	1 cut(s)	90
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	17, 81, 257
Hpy188III	TCNNGA	3 cut(s)	7, 107, 235
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 221
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	47, 120, 125, 168
Lsp1109I	GCAGC	2 cut(s)	73, 227
LweI	GCATC	1 cut(s)	141
MaeII	ACGT	1 cut(s)	174
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	3 cut(s)	30, 127, 221
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	6 cut(s)	11, 41, 124, 127, 130, 214
MspA1I	CMGCKG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	10, 221
NdeII	GATC	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	88, 217
PvuII	CAGCTG	1 cut(s)	218
SatI	GCNGC	2 cut(s)	87, 216
Sau3AI	GATC	1 cut(s)	76
SetI	ASST	7 cut(s)	15, 22, 122, 138, 177, 198, 220
SfaNI	GCATC	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	5, 233
SmoI	CTYRAG	2 cut(s)	5, 233
Sse9I	AATT	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	86, 215
TspDTI	ATGAA	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.