Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008845

Physical Location & Seq

Genomic Coordinates Reverse (-)

1951843 .. 1953334

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG027900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGAAGAGAGCAACCTCAGTAAACCATTTCTTAAAGAACTTGAGAAGAAAGTGATGCCTGCAATTGAGAATGGCGGCGTGAAACTTGTCATTCACAAGGAGGTTTTTACATTCAAAGAAGCAACCGAGGCATACAAACTCAAGAAAAGTGACAATCATATCGGAAAGATATTGCTTCATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

61

Amino Acids

6.98

Weight (kDa)

8.97

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N_2	PF13602	9 - 59	5.5e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02170
rosa_chinensis	RchiOBHm_Chr5g0003051 RchiOBHm_Chr5g0003521
rosa_laevigata	RLG00000031095 RLG00000031097 RLG00000031110
rosa_multiflora	Rmu_co8296325.1_g000001 Rmu_sc0000146.1_g000013 Rmu_sc0004279.1_g000013
rosa_roxburghii	Rroxscaffold_1G00072500
rosa_rugosa	Rorug04G0401800 Rorug04G0402000 Rorug04G0402100
rosa_samantha	Rh5AG024500 Rh5BG027900 Rh5CG027400 Rh5CG033300 Rh5DG027900 Rh6DG004000
rosa_wichuraiana	Rw5G002530 Rw5G002550 Rw5G002620 Rw5G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	115
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
BmsI	GCATC	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	62, 125
BsaJI	CCNNGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	31
BspACI	CCGC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	17
FaiI	YATR	2 cut(s)	133, 159
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	76
GluI	GCNGC	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	17
LpnPI	CCDG	1 cut(s)	72
LweI	GCATC	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	17, 58
MfeI	CAATTG	1 cut(s)	63
MluCI	AATT	1 cut(s)	63
MnlI	CCTC	3 cut(s)	26, 94, 121
MseI	TTAA	1 cut(s)	33
MunI	CAATTG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	76
SetI	ASST	2 cut(s)	18, 105
SfaNI	GCATC	1 cut(s)	45
SgeI	CNNG	7 cut(s)	53, 71, 91, 98, 109, 139, 154
SmlI	CTYRAG	2 cut(s)	41, 140
SmoI	CTYRAG	2 cut(s)	41, 140
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	1 cut(s)	75
TasI	AATT	1 cut(s)	63
TauI	GCSGC	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.