Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008845

Physical Location & Seq

Genomic Coordinates Reverse (-)

2413899 .. 2415300

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGGAAAGATGATGACTACAGTTGGAATCACCGGGTAGAAAGTTACAAGTTCATTTGGTTGCAAATGAATATGAGGTATAAGCATAGAAAGCCAAATTCATCAAATGGTAGAACAAAGATCAGTTGGGTTATGGAATGGGAGGTGGAAGACGGTCAAAATCAGATTGGAGTCCATTCATGGTGCATAGCTTTCATACCTGCTGGAGCAACTGTAATTGCAACAGCAGGTACTGCCACAAAGATAGCTGAATGTAAACGTCTTGGAGCTGACCTATGCATCAACTATAACAAAAACGACTTTGTTGAAGCGATAAAGGACAGGATTAAAGGCCAAGGCGTTGATGTCATATTGGATTGTGTTGGGTTCAATTATTTTCATAGAAACCTTGAATGCTTGAAGGAAGGTGGGAGACTTGTTCAAATTGGTCTAGGTCCCCGATCGACCTGGCTCTTGATACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

154

Amino Acids

17.68

Weight (kDa)

8.83

Isoelectric Point (pI)

20.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	68 - 146	2e-22	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	88 - 146	3.2e-12	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02170
rosa_chinensis	RchiOBHm_Chr5g0003051 RchiOBHm_Chr5g0003521
rosa_laevigata	RLG00000031095 RLG00000031097 RLG00000031110
rosa_multiflora	Rmu_co8296325.1_g000001 Rmu_sc0000146.1_g000013 Rmu_sc0004279.1_g000013
rosa_roxburghii	Rroxscaffold_1G00072500
rosa_rugosa	Rorug04G0401800 Rorug04G0402000 Rorug04G0402100
rosa_samantha	Rh5AG024500 Rh5BG027900 Rh5CG027400 Rh5CG033300 Rh5DG027900 Rh6DG004000
rosa_wichuraiana	Rw5G002530 Rw5G002550 Rw5G002620 Rw5G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	208, 218
AcsI	RAATTY	1 cut(s)	97
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	5 cut(s)	308, 370, 392, 400, 422
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	3 cut(s)	191, 248, 269
AluI	AGCT	3 cut(s)	191, 248, 269
Alw26I	GTCTC	1 cut(s)	406
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	19
BfuAI	ACCTGC	2 cut(s)	208, 218
Bme1390I	CCNGG	2 cut(s)	35, 448
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	35, 448
BmsI	GCATC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	334
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	120, 440
BspANI	GGCC	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	436
BspMI	ACCTGC	2 cut(s)	208, 218
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	120, 440
BssT1I	CCWWGG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	3 cut(s)	23, 155, 214
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	123, 443
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	2 cut(s)	120, 440
BstMCI	CGRYCG	1 cut(s)	443
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 233
BstNI	CCWGG	1 cut(s)	448
BstSCI	CCNGG	2 cut(s)	33, 446
BstSFI	CTRYAG	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	333
BveI	ACCTGC	2 cut(s)	208, 218
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	2 cut(s)	180, 462
CviJI	RGCY	6 cut(s)	94, 191, 248, 269, 333, 451
CviKI_1	RGCY	6 cut(s)	94, 191, 248, 269, 333, 451
CviQI	GTAC	1 cut(s)	231
DpnI	GATC	2 cut(s)	122, 442
DpnII	GATC	2 cut(s)	120, 440
Eco130I	CCWWGG	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	446
EcoT14I	CCWWGG	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	183, 465
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	2 cut(s)	179, 461
FspBI	CTAG	1 cut(s)	431
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	2 cut(s)	183, 465
HinfI	GANTC	2 cut(s)	28, 171
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	454
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	394, 398
HpyCH4III	ACNGT	3 cut(s)	23, 155, 214
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	4 cut(s)	64, 186, 221, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 233
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	2 cut(s)	183, 465
Kzo9I	GATC	2 cut(s)	120, 440
LmnI	GCTCC	2 cut(s)	206, 266
LpnPI	CCDG	7 cut(s)	47, 189, 213, 213, 307, 433, 460
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	122, 442
MboI	GATC	2 cut(s)	120, 440
MboII	GAAGA	1 cut(s)	161
MluCI	AATT	4 cut(s)	97, 216, 370, 423
MlyI	GAGTC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	5
MnlI	CCTC	2 cut(s)	69, 136
Mph1103I	ATGCAT	1 cut(s)	281
MseI	TTAA	1 cut(s)	327
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	35, 448
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	2 cut(s)	91, 233
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	120, 440
NlaIII	CATG	2 cut(s)	183, 465
NlaIV	GGNNCC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	281
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	28
Ple19I	CGATCG	1 cut(s)	443
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	434
PspPPI	RGGWCCY	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	233
PvuI	CGATCG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	120, 440
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	35, 448
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	434
Sse9I	AATT	4 cut(s)	97, 216, 370, 423
SspMI	CTAG	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	33, 446
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	23, 155, 214
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	443
TasI	AATT	4 cut(s)	97, 216, 370, 423
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TspDTI	ATGAA	6 cut(s)	43, 83, 90, 168, 184, 368
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	1 cut(s)	97
XspI	CTAG	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.