RLG00000031110

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008845
Physical Location & Seq
Reverse (-)
2189636 .. 2202332
12697 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031110

Sequence Viewer

Length: 1434 bp
ATGCTCAAGAAGCTCGGAGGTGGTGGGAAGTCCCAGTCTTCCAAGAGAGGGAAAGAGAGTAAGAGCAATGAGAAAGATCAGAGTAAGAGTACTAGTACTGAGTCGACGTCGTCGGGACCACGGAAGCAGCTGTTGATGCGCGCCGTAGTTGCTACGAGTGAAGACTACGCCGGGGTAAACGGACCCGACGTTGAAGAGAGCAAGCACGGCGAGTCACCTCAGATCAAGGAACTTGAGGAGGATGGAACTAAAAGCAAGTATTTGGGTCTAGAGTGTTCAGGAACCATCTATGCTCTTGGGGAGGGGATCTCCAAAAAAGACGAGCAAATCTGGAAAAAAGACACTAAGGTGTGTGCCATTGTTTTTGGCGGTGCCTATGCGGAGTACTTTGCTGTTCCAGTAGGACACCTTCTGAAATTCACAACAAAGATTACCGTCAAGCAAGCTGCTGCTATTCCACAAGCTGCTTGCACCGTCTGGTCCGAATTGTTCATGAAGAAAAGGCTAGATGAGGGGCTTGCAGTACAGGAGGAAGAAGGGAGTCGGCTTTCTTCAGGCGAGACAGTTTTGGTAACTCCATTTTTGCTTGAATATCTTCTATGCATGGGTTATCACCAATGCGTTGATGTTATCTTGGATTGCGTTGGGTTTAAGTATTTTCAGAGAAATCTTCAATGCCTGAAGGAAGGTGGGAGACTTATTCAAATTGGTGGCTGTTGGATGACACAATACGATTCTTATGGAAAAGTACAAAAGCTCTTTTCAAATTTCAAATGCATTGATGTGGCTGCCTTGGTATACAGAACTCCAGAGATGAAGACCTCCATTGTTGAGGAGGTTCAGGGGAAAGTGATGCCTGCAATTGAGAATGGCGACGTGAAACTTGTGATTCACAAGGAACGCTCAGATGGGAGGGCAAATATCTCGTCTTATGAAGATTTGTGGTATATATATTTCTCTGTTAATGATCCTTTTGATATAATAGCATCATGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTGTTCTTCCTGAATGGTGAACAGGATCTCTCAGCATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCGACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGATTTGCTTGGCTATGAAGAGGTGTCCTTTTATCTTTGTGCAAAAGTAATGATGCCCACGCTTGCCTTTACTATATATAATGGATTGGTAGAGGCAGCAGTTGTACCCTATTTAGGATTGAGCATTCAGGATTTGAGTCTAGATGAGAAGGCAGAGTTTCTGTTGGTTGCTCAAGGTGTTACGACTGCAGCCATACTTGGAGTTCTGTATACCATTGCCGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCTATGGTACTAGTCCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

478

Amino Acids

52.86

Weight (kDa)

5.47

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N_2 PF13602 205 - 299 7.6e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 371
AccI GTMKAC 3 cut(s) 104, 798, 1367
AccII CGCG 1 cut(s) 141
AciI CCGC 4 cut(s) 369, 380, 1013, 1391
AclWI GGATC 3 cut(s) 314, 962, 1074
AcsI RAATTY 4 cut(s) 416, 766, 1140, 1382
AcuI CTGAAG 2 cut(s) 537, 701
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 7 cut(s) 91, 97, 386, 525, 750, 1263, 1420
AfiI CCNNNNNNNGG 3 cut(s) 48, 1026, 1271
AgsI TTSAA 7 cut(s) 194, 590, 674, 704, 765, 772, 1008
AhlI ACTAGT 2 cut(s) 92, 1421
AjiI CACGTC 1 cut(s) 877
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 6 cut(s) 13, 130, 446, 464, 757, 1151
AluI AGCT 6 cut(s) 13, 130, 446, 464, 757, 1151
Alw26I GTCTC 3 cut(s) 554, 688, 1135
AlwI GGATC 3 cut(s) 314, 962, 1074
Ama87I CYCGRG 1 cut(s) 1152
ApeKI GCWGC 8 cut(s) 127, 446, 449, 464, 788, 1253, 1346, 1393
ApoI RAATTY 4 cut(s) 416, 766, 1140, 1382
ArsI GACNNNNNNTTYG 4 cut(s) 911, 943, 1001, 1033
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 2 cut(s) 141, 143
AspS9I GGNCC 3 cut(s) 116, 182, 480
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 3 cut(s) 207, 605, 1070
AvaI CYCGRG 1 cut(s) 1152
AvaII GGWCC 3 cut(s) 116, 182, 480
BanI GGYRCC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 393, 425
BbsI GAAGAC 3 cut(s) 30, 168, 824
BbvI GCAGC 8 cut(s) 139, 433, 436, 451, 775, 1265, 1358, 1380
BccI CCATC 3 cut(s) 236, 293, 902
BceAI ACGGC 2 cut(s) 128, 223
BcgI CGANNNNNNTGC 2 cut(s) 906, 940
BciVI GTATCC 1 cut(s) 1119
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 3 cut(s) 554, 688, 1135
BcuI ACTAGT 2 cut(s) 92, 1421
BfaI CTAG 5 cut(s) 93, 269, 506, 1298, 1422
BfmI CTRYAG 1 cut(s) 1344
BfuI GTATCC 1 cut(s) 1119
BisI GCNGC 8 cut(s) 128, 447, 450, 465, 789, 1254, 1347, 1394
BlsI GCNGC 8 cut(s) 129, 448, 451, 466, 790, 1255, 1348, 1395
BmcAI AGTACT 3 cut(s) 91, 97, 386
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 3 cut(s) 116, 182, 480
BmeT110I CYCGRG 1 cut(s) 1152
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 3 cut(s) 116, 182, 480
BmiI GGNNCC 4 cut(s) 117, 184, 283, 373
BmrFI CCNGG 1 cut(s) 172
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 4 cut(s) 126, 843, 995, 1200
BmuI ACTGGG 1 cut(s) 28
BpiI GAAGAC 3 cut(s) 30, 168, 824
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BpmI CTGGAG 1 cut(s) 792
BpuEI CTTGAG 3 cut(s) 254, 1314, 1383
BpuMI CCSGG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 1407
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 119, 171, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 1026, 1271
Bse118I RCCGGY 1 cut(s) 1376
Bse1I ACTGG 3 cut(s) 34, 398, 1089
Bse3DI GCAATG 2 cut(s) 73, 1371
Bse8I GATNNNNATC 1 cut(s) 1407
BseDI CCNNGG 3 cut(s) 119, 171, 792
BseGI GGATG 2 cut(s) 247, 726
BseJI GATNNNNATC 1 cut(s) 1407
BseLI CCNNNNNNNGG 3 cut(s) 48, 1026, 1271
BseMI GCAATG 2 cut(s) 73, 1371
BseMII CTCAG 6 cut(s) 90, 233, 918, 1026, 1086, 1161
BseNI ACTGG 3 cut(s) 34, 398, 1089
BsePI GCGCGC 1 cut(s) 139
BseRI GAGGAG 2 cut(s) 251, 848
BseXI GCAGC 8 cut(s) 139, 433, 436, 451, 775, 1265, 1358, 1380
Bsh1236I CGCG 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 1152
BsiSI CCGG 2 cut(s) 171, 1377
BslFI GGGAC 3 cut(s) 16, 129, 1003
BslI CCNNNNNNNGG 3 cut(s) 48, 1026, 1271
BsmAI GTCTC 3 cut(s) 554, 688, 1135
BsmFI GGGAC 3 cut(s) 16, 129, 1003
BsmI GAATGC 1 cut(s) 1281
BsoBI CYCGRG 1 cut(s) 1152
Bsp143I GATC 5 cut(s) 76, 222, 306, 967, 1066
BspACI CCGC 4 cut(s) 369, 380, 1013, 1391
BspCNI CTCAG 6 cut(s) 91, 232, 917, 1027, 1085, 1160
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 4 cut(s) 117, 184, 283, 373
BspMAI CTGCAG 1 cut(s) 1348
BspPI GGATC 3 cut(s) 314, 962, 1074
BspT107I GGYRCC 1 cut(s) 371
BsrDI GCAATG 2 cut(s) 73, 1371
BsrFI RCCGGY 1 cut(s) 1376
BsrI ACTGG 3 cut(s) 34, 398, 1089
BssAI RCCGGY 1 cut(s) 1376
BssECI CCNNGG 3 cut(s) 119, 171, 792
BssHII GCGCGC 1 cut(s) 139
BssMI GATC 5 cut(s) 76, 222, 306, 967, 1066
BssNAI GTATAC 2 cut(s) 799, 1368
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 792
Bst1107I GTATAC 2 cut(s) 799, 1368
Bst4CI ACNGT 3 cut(s) 436, 475, 565
Bst6I CTCTTC 2 cut(s) 189, 1170
BstACI GRCGYC 1 cut(s) 107
BstC8I GCNNGC 9 cut(s) 141, 203, 444, 469, 519, 858, 1032, 1221, 1378
BstDEI CTNAG 7 cut(s) 99, 219, 345, 904, 1035, 1072, 1147
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 247, 726
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 2 cut(s) 141, 143
BstKTI GATC 5 cut(s) 79, 225, 309, 970, 1069
BstMAI GTCTC 3 cut(s) 554, 688, 1135
BstMBI GATC 5 cut(s) 76, 222, 306, 967, 1066
BstMWI GCNNNNNNNGC 4 cut(s) 10, 136, 149, 207
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 1344
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 8 cut(s) 139, 433, 436, 451, 775, 1265, 1358, 1380
BstV2I GAAGAC 3 cut(s) 30, 168, 824
BstX2I RGATCY 2 cut(s) 306, 1066
BstYI RGATCY 2 cut(s) 306, 1066
BstZ17I GTATAC 2 cut(s) 799, 1368
BsuI GTATCC 1 cut(s) 1119
BtgI CCRYGG 1 cut(s) 119
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 2 cut(s) 247, 726
Cac8I GCNNGC 9 cut(s) 141, 203, 444, 469, 519, 858, 1032, 1221, 1378
CciI TCATGA 1 cut(s) 492
CfoI GCGC 2 cut(s) 141, 143
Cfr10I RCCGGY 1 cut(s) 1376
Cfr13I GGNCC 3 cut(s) 116, 182, 480
Csp6I GTAC 7 cut(s) 90, 96, 385, 524, 749, 1262, 1419
CviAII CATG 3 cut(s) 493, 604, 990
CviQI GTAC 7 cut(s) 90, 96, 385, 524, 749, 1262, 1419
DdeI CTNAG 7 cut(s) 99, 219, 345, 904, 1035, 1072, 1147
DpnI GATC 5 cut(s) 78, 224, 308, 969, 1068
DpnII GATC 5 cut(s) 76, 222, 306, 967, 1066
Eam1104I CTCTTC 2 cut(s) 189, 1170
EarI CTCTTC 2 cut(s) 189, 1170
Eco130I CCWWGG 1 cut(s) 792
Eco32I GATATC 1 cut(s) 1002
Eco47I GGWCC 3 cut(s) 116, 182, 480
Eco57I CTGAAG 2 cut(s) 537, 701
Eco88I CYCGRG 1 cut(s) 1152
EcoRV GATATC 1 cut(s) 1002
EcoT14I CCWWGG 1 cut(s) 792
EcoT22I ATGCAT 2 cut(s) 605, 779
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 3 cut(s) 496, 607, 993
FaqI GGGAC 3 cut(s) 16, 129, 1003
FatI CATG 3 cut(s) 492, 603, 989
FblI GTMKAC 3 cut(s) 104, 798, 1367
Fnu4HI GCNGC 8 cut(s) 128, 447, 450, 465, 789, 1254, 1347, 1394
FokI GGATG 2 cut(s) 254, 733
Fsp4HI GCNGC 8 cut(s) 128, 447, 450, 465, 789, 1254, 1347, 1394
FspBI CTAG 5 cut(s) 93, 269, 506, 1298, 1422
GlaI GCGC 2 cut(s) 140, 142
GluI GCNGC 8 cut(s) 128, 447, 450, 465, 789, 1254, 1347, 1394
GsuI CTGGAG 1 cut(s) 792
HapII CCGG 2 cut(s) 171, 1377
HhaI GCGC 2 cut(s) 141, 143
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 3 cut(s) 496, 607, 993
Hin6I GCGC 2 cut(s) 139, 141
HinP1I GCGC 2 cut(s) 139, 141
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 7 cut(s) 101, 212, 541, 734, 889, 1016, 1294
HpaII CCGG 2 cut(s) 171, 1377
HphI GGTGA 3 cut(s) 207, 605, 1070
Hpy166II GTNNAC 5 cut(s) 105, 178, 799, 1061, 1368
Hpy188I TCNGA 8 cut(s) 17, 81, 222, 414, 484, 663, 907, 1113
Hpy8I GTNNAC 5 cut(s) 105, 178, 799, 1061, 1368
Hpy99I CGWCG 5 cut(s) 109, 112, 115, 191, 878
HpyAV CCTTC 5 cut(s) 419, 530, 676, 680, 1300
HpyCH4III ACNGT 3 cut(s) 436, 475, 565
HpyCH4IV ACGT 3 cut(s) 107, 189, 876
HpyCH4V TGCA 8 cut(s) 471, 521, 603, 777, 860, 1125, 1199, 1346
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 136, 149, 207
HpyF3I CTNAG 7 cut(s) 99, 219, 345, 904, 1035, 1072, 1147
HpySE526I ACGT 3 cut(s) 107, 189, 876
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 3 cut(s) 496, 607, 993
HspAI GCGC 2 cut(s) 139, 141
KroI GCCGGC 1 cut(s) 1376
KroNI GCCGGC 1 cut(s) 1378
Kzo9I GATC 5 cut(s) 76, 222, 306, 967, 1066
Lsp1109I GCAGC 8 cut(s) 139, 433, 436, 451, 775, 1265, 1358, 1380
LweI GCATC 4 cut(s) 126, 843, 995, 1200
MaeI CTAG 5 cut(s) 93, 269, 506, 1298, 1422
MaeII ACGT 3 cut(s) 107, 189, 876
MaeIII GTNAC 3 cut(s) 213, 571, 1336
MalI GATC 5 cut(s) 78, 224, 308, 969, 1068
MboI GATC 5 cut(s) 76, 222, 306, 967, 1066
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 2 cut(s) 306, 1066
MluCI AATT 7 cut(s) 416, 485, 705, 766, 861, 1140, 1382
MlyI GAGTC 5 cut(s) 110, 221, 550, 1025, 1303
MmeI TCCRAC 3 cut(s) 698, 1136, 1411
Mph1103I ATGCAT 2 cut(s) 605, 779
MroNI GCCGGC 1 cut(s) 1376
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 2 cut(s) 651, 963
MslI CAYNNNNRTG 2 cut(s) 347, 782
MspA1I CMGCKG 2 cut(s) 130, 1393
MspI CCGG 2 cut(s) 171, 1377
MspR9I CCNGG 1 cut(s) 172
MunI CAATTG 1 cut(s) 861
Mva1269I GAATGC 1 cut(s) 1281
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 10, 136, 149, 207
NaeI GCCGGC 1 cut(s) 1378
NciI CCSGG 1 cut(s) 172
NdeII GATC 5 cut(s) 76, 222, 306, 967, 1066
NgoMIV GCCGGC 1 cut(s) 1376
NlaIII CATG 3 cut(s) 496, 607, 993
NlaIV GGNNCC 4 cut(s) 117, 184, 283, 373
NmuCI GTSAC 1 cut(s) 213
NsiI ATGCAT 2 cut(s) 605, 779
OliI CACNNNNGTG 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 1152
PagI TCATGA 1 cut(s) 492
PauI GCGCGC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PctI GAATGC 1 cut(s) 1281
PdiI GCCGGC 1 cut(s) 1378
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 2 cut(s) 734, 889
PflFI GACNNNGTC 1 cut(s) 109
PkrI GCNGC 8 cut(s) 129, 448, 451, 466, 790, 1255, 1348, 1395
PleI GAGTC 5 cut(s) 109, 220, 549, 1024, 1302
PpsI GAGTC 5 cut(s) 109, 220, 549, 1024, 1302
PspN4I GGNNCC 4 cut(s) 117, 184, 283, 373
PspPI GGNCC 3 cut(s) 116, 182, 480
PstI CTGCAG 1 cut(s) 1348
PsuI RGATCY 2 cut(s) 306, 1066
PsyI GACNNNGTC 1 cut(s) 109
PteI GCGCGC 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 7 cut(s) 91, 97, 386, 525, 750, 1263, 1420
RsaNI GTAC 7 cut(s) 90, 96, 385, 524, 749, 1262, 1419
RseI CAYNNNNRTG 2 cut(s) 347, 782
SalI GTCGAC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 651, 963
SatI GCNGC 8 cut(s) 128, 447, 450, 465, 789, 1254, 1347, 1394
Sau3AI GATC 5 cut(s) 76, 222, 306, 967, 1066
Sau96I GGNCC 3 cut(s) 116, 182, 480
ScaI AGTACT 3 cut(s) 91, 97, 386
SchI GAGTC 5 cut(s) 110, 221, 550, 1025, 1303
ScrFI CCNGG 1 cut(s) 172
SfaNI GCATC 4 cut(s) 126, 843, 995, 1200
SfcI CTRYAG 1 cut(s) 1344
Sfr274I CTCGAG 1 cut(s) 1152
SinI GGWCC 3 cut(s) 116, 182, 480
SlaI CTCGAG 1 cut(s) 1152
SmiMI CAYNNNNRTG 2 cut(s) 347, 782
SmlI CTYRAG 5 cut(s) 5, 233, 1152, 1329, 1398
SmoI CTYRAG 5 cut(s) 5, 233, 1152, 1329, 1398
SpeI ACTAGT 2 cut(s) 92, 1421
Sse9I AATT 7 cut(s) 416, 485, 705, 766, 861, 1140, 1382
SsiI CCGC 4 cut(s) 369, 380, 1013, 1391
SspMI CTAG 5 cut(s) 93, 269, 506, 1298, 1422
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 436, 475, 565
TaiI ACGT 3 cut(s) 110, 192, 879
TaqI TCGA 2 cut(s) 104, 1153
TasI AATT 7 cut(s) 416, 485, 705, 766, 861, 1140, 1382
TatI WGTACW 5 cut(s) 89, 95, 384, 523, 748
TfiI GAWTC 2 cut(s) 734, 889
Tru1I TTAA 2 cut(s) 651, 963
Tru9I TTAA 2 cut(s) 651, 963
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 8 cut(s) 127, 446, 449, 464, 788, 1253, 1346, 1393
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 5 cut(s) 481, 509, 830, 948, 1188
TspGWI ACGGA 2 cut(s) 136, 195
Tth111I GACNNNGTC 1 cut(s) 109
VpaK11BI GGWCC 3 cut(s) 116, 182, 480
XapI RAATTY 4 cut(s) 416, 766, 1140, 1382
XbaI TCTAGA 2 cut(s) 268, 1297
XhoI CTCGAG 1 cut(s) 1152
XmiI GTMKAC 3 cut(s) 104, 798, 1367
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 5 cut(s) 93, 269, 506, 1298, 1422
ZraI GACGTC 1 cut(s) 108
ZrmI AGTACT 3 cut(s) 91, 97, 386
Zsp2I ATGCAT 2 cut(s) 605, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.