Rroxscaffold_1G00072500

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
93550292 .. 93553638
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072500.1

Sequence Viewer

Length: 1365 bp
ATGCTCAAGAAGCTCGGAGGTGGTGGGAAGTCCCAGTCTTCCAAGAGAGGGAAAGAGAGTAAGAGCAATGAGAAAGATCAGAGTAAGAGTACTAGTACTGAGTCGACGTCGTCGGGACCACAGAAGGAGCTGTTGATGCGCGCCATAGTTGCTACGAGTGAAGGTCAACTCAAAGTACAACTGGTGCCTAGACCAGTACCCAAAGCAAACGAGGTACTTGTCAAAGTAGACTACGCCGGGGTCAACGGACCCGACGTTGAAGAGAGCAAGCACGGCAAGTCACCTCAGATCAAGGAACTTGAGGAGGATGGAACTAAAAGCAAGTATTTGGGTCTAGAGTGTTCAGGAACCATCTGTGCTCTTGGGGAGGGGATCTCCAAAAAAGACAAGCAAATCTGGAAAAAAGACACTAAGGTGTGTGCCATTGTTTTTGGCGGTGCCTATGCGGAGTACGTTGCTGTTCCAGTAGGACACCTTCTGAAATTCACAACAAAGATTAACGTCAAGCAAGCTGCTGCTATTCCACAAGCTGCTTGCACCGTCTGGTCCGAATTATTCATGAAGAAAAGGCTAGATGAGGGGCTTGCAGTACAGGAGGAAGAAGGGAGTCGGCTTTCTTCAGGCGAGACAGTTTTGCTCCAATGTATTGAGCCTAAGTTTACAGTCAAGGCTACTTTGTACGATGAGGATAATCTGAAAAGCTATCAGAAGCTATTGGAAGTGCTTGAAGCATTGGCCTTTCCCTTTCTCTTTGATGTTGGGTGCAGTGGCAGTGGATTCGGGTTGGACTTCATTTTGACTAATACTATATACATTCATGGAGGCTGCAGTGGAATTGGCATATTTGCGATTCAGATGGCTAAGTACCAGGGAGCCATTGTATTTGCAACAGCAGGTACCGACGCAAAGATAGCTGAATGTAAACGTCTTGGAGCTGACCTATGCATCAACTATAACAAAAATGACTTTGTTGAAGTGATAAGGGACAGCACTAAAGGCCAAGGCGTTGATGTTATCTTGGATTGCGTTGGGTTTAAGTATTTTCAGAGAAATCTTGAATGCCTGAAGGAAGGTGGGAGACTTGTTCAAATTGGTGGCTGTTGGATGACACAATACGATTCTTATGGAAAAGTACAAAAGCTCTTTTCAAATTTCAAATGCATTGATGTGGCTGCCTTGGTATACAGAACTCCAGAGATGAAGACCTCCATTGTTGAGGAGGTTCAGGGGAAAGTGATGCCTGCAATTGAGAATGGCAACGTGAAACTTCTGATTCACAAGGTTTTTACATTCGAAGAAGCAGCTGAGGCACACAAACTCAAGAAAAGTGGCAATCATATCGGAAAGATATTGCTTCACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

49.55

Weight (kDa)

8.5

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 69 - 161 2.5e-09 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 278 - 372 4e-28 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 310 - 452 1e-24 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 884
Acc65I GGTACC 1 cut(s) 896
AccB1I GGYRCC 3 cut(s) 184, 437, 896
AccI GTMKAC 3 cut(s) 104, 228, 1182
AccII CGCG 1 cut(s) 141
AciI CCGC 2 cut(s) 435, 446
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 482, 1150
AcuI CTGAAG 2 cut(s) 603, 1085
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 7 cut(s) 260, 728, 974, 1058, 1088, 1149, 1156
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 1 cut(s) 867
AleI CACNNNNGTG 1 cut(s) 413
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 620, 1072
AlwI GGATC 1 cut(s) 380
AoxI GGCC 2 cut(s) 735, 997
ApeKI GCWGC 6 cut(s) 512, 515, 530, 825, 1172, 1301
ApoI RAATTY 2 cut(s) 482, 1150
Asp718I GGTACC 1 cut(s) 896
AspLEI GCGC 2 cut(s) 141, 143
AspS9I GGNCC 3 cut(s) 116, 248, 546
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 273, 1349
AsuII TTCGAA 1 cut(s) 1293
AvaII GGWCC 3 cut(s) 116, 248, 546
BanI GGYRCC 3 cut(s) 184, 437, 896
BarI GAAGNNNNNNTAC 2 cut(s) 459, 491
BbsI GAAGAC 2 cut(s) 30, 1208
Bbv12I GWGCWC 1 cut(s) 361
BbvCI CCTCAGC 1 cut(s) 1305
BbvI GCAGC 6 cut(s) 499, 502, 517, 812, 1159, 1313
BccI CCATC 3 cut(s) 302, 359, 850
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 4 cut(s) 760, 794, 1321, 1355
BciT130I CCWGG 1 cut(s) 869
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 620, 1072
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 4 cut(s) 93, 189, 335, 572
BfmI CTRYAG 1 cut(s) 826
BfuAI ACCTGC 1 cut(s) 884
BisI GCNGC 6 cut(s) 513, 516, 531, 826, 1173, 1302
BlsI GCNGC 6 cut(s) 514, 517, 532, 827, 1174, 1303
BmcAI AGTACT 2 cut(s) 91, 97
Bme1390I CCNGG 2 cut(s) 238, 869
Bme18I GGWCC 3 cut(s) 116, 248, 546
BmgT120I GGNCC 3 cut(s) 116, 248, 546
BmiI GGNNCC 7 cut(s) 117, 186, 250, 349, 439, 874, 898
BmrFI CCNGG 2 cut(s) 238, 869
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 3 cut(s) 126, 954, 1227
BmuI ACTGGG 1 cut(s) 28
BpiI GAAGAC 2 cut(s) 30, 1208
BplI GAGNNNNNCTC 2 cut(s) 359, 391
BpmI CTGGAG 1 cut(s) 1176
Bpu10I CCTNAGC 1 cut(s) 1305
Bpu14I TTCGAA 1 cut(s) 1293
BpuEI CTTGAG 2 cut(s) 320, 1304
BpuMI CCSGG 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 237, 868, 1000, 1176
BsaXI ACNNNNNCTCC 2 cut(s) 864, 894
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 4 cut(s) 34, 186, 194, 464
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 869
BseDI CCNNGG 4 cut(s) 237, 868, 1000, 1176
BseGI GGATG 2 cut(s) 313, 1110
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 90, 299, 1296
BseNI ACTGG 4 cut(s) 34, 186, 194, 464
BsePI GCGCGC 1 cut(s) 139
BseRI GAGGAG 2 cut(s) 317, 1232
BseXI GCAGC 6 cut(s) 499, 502, 517, 812, 1159, 1313
BsgI GTGCAG 1 cut(s) 784
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 737, 999
BshNI GGYRCC 3 cut(s) 184, 437, 896
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 3 cut(s) 16, 129, 998
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 620, 1072
BsmFI GGGAC 3 cut(s) 16, 129, 998
BsmI GAATGC 1 cut(s) 1064
BsnI GGCC 2 cut(s) 737, 999
Bsp119I TTCGAA 1 cut(s) 1293
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 3 cut(s) 76, 288, 372
BspACI CCGC 2 cut(s) 435, 446
BspANI GGCC 2 cut(s) 737, 999
BspCNI CTCAG 3 cut(s) 91, 298, 1297
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 7 cut(s) 117, 186, 250, 349, 439, 874, 898
BspMAI CTGCAG 1 cut(s) 830
BspMI ACCTGC 1 cut(s) 884
BspPI GGATC 1 cut(s) 380
BspT104I TTCGAA 1 cut(s) 1293
BspT107I GGYRCC 3 cut(s) 184, 437, 896
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 4 cut(s) 34, 186, 194, 464
BssECI CCNNGG 4 cut(s) 237, 868, 1000, 1176
BssHII GCGCGC 1 cut(s) 139
BssMI GATC 3 cut(s) 76, 288, 372
BssNAI GTATAC 1 cut(s) 1183
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 2 cut(s) 1000, 1176
Bst1107I GTATAC 1 cut(s) 1183
Bst2UI CCWGG 1 cut(s) 869
Bst4CI ACNGT 3 cut(s) 541, 631, 664
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 1293
BstC8I GCNNGC 6 cut(s) 141, 269, 510, 535, 585, 1242
BstDEI CTNAG 6 cut(s) 99, 285, 411, 654, 861, 1305
BstF5I GGATG 2 cut(s) 313, 1110
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 2 cut(s) 141, 143
BstKTI GATC 3 cut(s) 79, 291, 375
BstMAI GTCTC 2 cut(s) 620, 1072
BstMBI GATC 3 cut(s) 76, 288, 372
BstMWI GCNNNNNNNGC 7 cut(s) 10, 136, 149, 273, 911, 996, 1307
BstNI CCWGG 1 cut(s) 869
BstSCI CCNGG 2 cut(s) 236, 867
BstSFI CTRYAG 1 cut(s) 826
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 6 cut(s) 499, 502, 517, 812, 1159, 1313
BstV2I GAAGAC 2 cut(s) 30, 1208
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BstZ17I GTATAC 1 cut(s) 1183
BsuRI GGCC 2 cut(s) 737, 999
BtsCI GGATG 2 cut(s) 313, 1110
BtsI GCAGTG 3 cut(s) 772, 778, 835
BtsIMutI CAGTG 3 cut(s) 772, 778, 835
BveI ACCTGC 1 cut(s) 884
Cac8I GCNNGC 6 cut(s) 141, 269, 510, 535, 585, 1242
CciI TCATGA 1 cut(s) 558
CfoI GCGC 2 cut(s) 141, 143
Cfr13I GGNCC 3 cut(s) 116, 248, 546
CseI GACGC 1 cut(s) 911
CspCI CAANNNNNGTGG 2 cut(s) 1309, 1344
CviAII CATG 2 cut(s) 559, 818
DdeI CTNAG 6 cut(s) 99, 285, 411, 654, 861, 1305
DpnI GATC 3 cut(s) 78, 290, 374
DpnII GATC 3 cut(s) 76, 288, 372
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 1000, 1176
Eco47I GGWCC 3 cut(s) 116, 248, 546
Eco57I CTGAAG 2 cut(s) 603, 1085
EcoRII CCWGG 1 cut(s) 867
EcoT14I CCWWGG 2 cut(s) 1000, 1176
EcoT22I ATGCAT 2 cut(s) 947, 1163
ErhI CCWWGG 2 cut(s) 1000, 1176
FaeI CATG 2 cut(s) 562, 821
FaqI GGGAC 3 cut(s) 16, 129, 998
FatI CATG 2 cut(s) 558, 817
FblI GTMKAC 3 cut(s) 104, 228, 1182
Fnu4HI GCNGC 6 cut(s) 513, 516, 531, 826, 1173, 1302
FokI GGATG 2 cut(s) 320, 1117
Fsp4HI GCNGC 6 cut(s) 513, 516, 531, 826, 1173, 1302
FspBI CTAG 4 cut(s) 93, 189, 335, 572
GlaI GCGC 2 cut(s) 140, 142
GluI GCNGC 6 cut(s) 513, 516, 531, 826, 1173, 1302
GsuI CTGGAG 1 cut(s) 1176
HaeIII GGCC 2 cut(s) 737, 999
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 911
HhaI GCGC 2 cut(s) 141, 143
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 562, 821
Hin6I GCGC 2 cut(s) 139, 141
HinP1I GCGC 2 cut(s) 139, 141
HincII GTYRAC 3 cut(s) 105, 167, 244
HindII GTYRAC 3 cut(s) 105, 167, 244
HinfI GANTC 6 cut(s) 101, 607, 777, 850, 1118, 1273
HpaII CCGG 1 cut(s) 237
HphI GGTGA 2 cut(s) 273, 1349
Hpy166II GTNNAC 7 cut(s) 105, 167, 229, 244, 660, 923, 1183
Hpy188III TCNNGA 9 cut(s) 7, 114, 335, 345, 397, 559, 1055, 1193, 1321
Hpy8I GTNNAC 7 cut(s) 105, 167, 229, 244, 660, 923, 1183
Hpy99I CGWCG 5 cut(s) 109, 112, 115, 257, 905
HpyAV CCTTC 6 cut(s) 118, 155, 485, 596, 1060, 1064
HpyCH4III ACNGT 3 cut(s) 541, 631, 664
HpyCH4IV ACGT 6 cut(s) 107, 255, 453, 501, 925, 1260
HpyCH4V TGCA 8 cut(s) 537, 587, 765, 828, 887, 945, 1161, 1244
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 136, 149, 273, 911, 996, 1307
HpyF3I CTNAG 6 cut(s) 99, 285, 411, 654, 861, 1305
HpySE526I ACGT 6 cut(s) 107, 255, 453, 501, 925, 1260
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 562, 821
HspAI GCGC 2 cut(s) 139, 141
KpnI GGTACC 1 cut(s) 900
Kzo9I GATC 3 cut(s) 76, 288, 372
LmnI GCTCC 4 cut(s) 127, 642, 872, 932
Lsp1109I GCAGC 6 cut(s) 499, 502, 517, 812, 1159, 1313
LweI GCATC 3 cut(s) 126, 954, 1227
MaeI CTAG 4 cut(s) 93, 189, 335, 572
MaeII ACGT 6 cut(s) 107, 255, 453, 501, 925, 1260
MaeIII GTNAC 1 cut(s) 279
MalI GATC 3 cut(s) 78, 290, 374
MboI GATC 3 cut(s) 76, 288, 372
MboII GAAGA 7 cut(s) 30, 272, 574, 609, 611, 1213, 1307
MfeI CAATTG 1 cut(s) 1245
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 6 cut(s) 482, 551, 834, 1089, 1150, 1245
MlyI GAGTC 2 cut(s) 110, 616
MmeI TCCRAC 2 cut(s) 765, 1082
Mph1103I ATGCAT 2 cut(s) 947, 1163
MseI TTAA 2 cut(s) 498, 1035
MslI CAYNNNNRTG 2 cut(s) 413, 1166
MspA1I CMGCKG 1 cut(s) 1304
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 2 cut(s) 238, 869
MunI CAATTG 1 cut(s) 1245
Mva1269I GAATGC 1 cut(s) 1064
MvaI CCWGG 1 cut(s) 869
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 7 cut(s) 10, 136, 149, 273, 911, 996, 1307
NciI CCSGG 1 cut(s) 238
NdeII GATC 3 cut(s) 76, 288, 372
NlaIII CATG 2 cut(s) 562, 821
NlaIV GGNNCC 7 cut(s) 117, 186, 250, 349, 439, 874, 898
NmuCI GTSAC 1 cut(s) 279
NsiI ATGCAT 2 cut(s) 947, 1163
NspV TTCGAA 1 cut(s) 1293
OliI CACNNNNGTG 1 cut(s) 413
PagI TCATGA 1 cut(s) 558
PauI GCGCGC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 1 cut(s) 1064
PfeI GAWTC 4 cut(s) 777, 850, 1118, 1273
PflFI GACNNNGTC 1 cut(s) 109
PkrI GCNGC 6 cut(s) 514, 517, 532, 827, 1174, 1303
PleI GAGTC 2 cut(s) 109, 615
PpsI GAGTC 2 cut(s) 109, 615
Psp6I CCWGG 1 cut(s) 867
PspGI CCWGG 1 cut(s) 867
PspN4I GGNNCC 7 cut(s) 117, 186, 250, 349, 439, 874, 898
PspPI GGNCC 3 cut(s) 116, 248, 546
PstI CTGCAG 1 cut(s) 830
PsuI RGATCY 1 cut(s) 372
PsyI GACNNNGTC 1 cut(s) 109
PteI GCGCGC 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 1304
RseI CAYNNNNRTG 2 cut(s) 413, 1166
SalI GTCGAC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 498, 1035
SatI GCNGC 6 cut(s) 513, 516, 531, 826, 1173, 1302
Sau3AI GATC 3 cut(s) 76, 288, 372
Sau96I GGNCC 3 cut(s) 116, 248, 546
ScaI AGTACT 2 cut(s) 91, 97
SchI GAGTC 2 cut(s) 110, 616
ScrFI CCNGG 2 cut(s) 238, 869
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 3 cut(s) 126, 954, 1227
SfcI CTRYAG 1 cut(s) 826
SfuI TTCGAA 1 cut(s) 1293
SinI GGWCC 3 cut(s) 116, 248, 546
SmiMI CAYNNNNRTG 2 cut(s) 413, 1166
SmlI CTYRAG 3 cut(s) 5, 299, 1319
SmoI CTYRAG 3 cut(s) 5, 299, 1319
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 6 cut(s) 482, 551, 834, 1089, 1150, 1245
SsiI CCGC 2 cut(s) 435, 446
SspMI CTAG 4 cut(s) 93, 189, 335, 572
StyD4I CCNGG 2 cut(s) 236, 867
StyI CCWWGG 2 cut(s) 1000, 1176
TaaI ACNGT 3 cut(s) 541, 631, 664
TaiI ACGT 6 cut(s) 110, 258, 456, 504, 928, 1263
TaqI TCGA 2 cut(s) 104, 1293
TasI AATT 6 cut(s) 482, 551, 834, 1089, 1150, 1245
TatI WGTACW 5 cut(s) 89, 95, 175, 589, 1132
TfiI GAWTC 4 cut(s) 777, 850, 1118, 1273
Tru1I TTAA 2 cut(s) 498, 1035
Tru9I TTAA 2 cut(s) 498, 1035
TscAI CASTG 3 cut(s) 772, 778, 835
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 6 cut(s) 512, 515, 530, 825, 1172, 1301
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 5 cut(s) 547, 575, 781, 806, 1214
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 3 cut(s) 772, 778, 835
Tth111I GACNNNGTC 1 cut(s) 109
VpaK11BI GGWCC 3 cut(s) 116, 248, 546
XapI RAATTY 2 cut(s) 482, 1150
XbaI TCTAGA 1 cut(s) 334
XmiI GTMKAC 3 cut(s) 104, 228, 1182
XspI CTAG 4 cut(s) 93, 189, 335, 572
ZraI GACGTC 1 cut(s) 108
ZrmI AGTACT 2 cut(s) 91, 97
Zsp2I ATGCAT 2 cut(s) 947, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.