Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008845

Physical Location & Seq

Genomic Coordinates Reverse (-)

2016608 .. 2019628

Gene Structure 3021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031097

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCTCAAGAAGCTCGGAGGTGGTGGGAAGTCCCAGTCTTCCAAGAGAGGGAAAGAGAGTAAGAACAATGAGAAAGATCAGAGTAAGAGTACTAGTACTGAGTCGACGTCGTCGGGACCACGGAAGCATCTGTTGATGCGCGCCATAGTTGCTACGTGTGAAGGTCAACTCAAAGTACAACTGGTGCCTAGACCAGTACCCAAAGCAAACGAGGTGCTTGTCAAAGTAGACTACGCCGGGGTCAACGGACCCGACGTTGAAGAGAGCAAGCACGGCAAGTCACCTCAGATCAAGGAACTTGAGGAGGATGGAACTAAAAGCAAGTATTTGGGTCTAGAGTGTTCAGGAACCATCTATGCTCTTGGGGAGGGGATCTCCAAAAAAGACGAGCAAATCTGGAAAAAAGACACTAAGGTGTGTGCCGTTGTTTTTGGCGGTGCCTATGCGGAGTACGTTGCTGTTCCAGTAGGACACCTTCTGAAATTCACAACAAAGATTACCGTCAAGCAAGCTGCTGCTATTCCACAAGCTGCTTGCACCGTCTGGTCCGAATTGTTCATGAAGAAAAGGCTAGATGAGGGGCTTGCAGTACAGGAGGAAGAAGGGAGTCGGCTTTCTTCAGGCGAGACAGTTTTGAGAAATCTTCAATGCCTGAAGGAAGGTGGGAGACTTATTCAAATTGGTGGCTGTTGGATGACACAATACGATTCTTATGGAAAAGTACAAAAGCTCTTTTCAAATTTCAAATGCATTGATGTGGCTGCCTTGGTATACAGAACTCCAGAGATGAAGACCTCCATTGTTGAGGAGGTTCAGGGGAAAGTGATGCCTGCAATTGAAAATGGCGACGTGAAACTTGTGATTCACAAGGTTTTTACGTTTGAAGAAGCAGCTGAGGCACACAAACTCAAGAAAAGTGGCAATCATATCGGAAAGATATTGCTTCACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

318

Amino Acids

34.68

Weight (kDa)

9.09

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	69 - 161	7.6e-10	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N_2	PF13602	209 - 315	7.4e-12	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02170
rosa_chinensis	RchiOBHm_Chr5g0003051 RchiOBHm_Chr5g0003521
rosa_laevigata	RLG00000031095 RLG00000031097 RLG00000031110
rosa_multiflora	Rmu_co8296325.1_g000001 Rmu_sc0000146.1_g000013 Rmu_sc0004279.1_g000013
rosa_roxburghii	Rroxscaffold_1G00072500
rosa_rugosa	Rorug04G0401800 Rorug04G0402000 Rorug04G0402100
rosa_samantha	Rh5AG024500 Rh5BG027900 Rh5CG027400 Rh5CG033300 Rh5DG027900 Rh6DG004000
rosa_wichuraiana	Rw5G002530 Rw5G002550 Rw5G002620 Rw5G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
AccB1I	GGYRCC	2 cut(s)	184, 437
AccI	GTMKAC	3 cut(s)	104, 228, 771
AccII	CGCG	1 cut(s)	141
AciI	CCGC	2 cut(s)	435, 446
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	2 cut(s)	482, 739
AcuI	CTGAAG	2 cut(s)	603, 674
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	7 cut(s)	91, 97, 177, 198, 452, 591, 723
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	7 cut(s)	260, 647, 677, 738, 745, 839, 884
AhlI	ACTAGT	1 cut(s)	92
AjiI	CACGTC	1 cut(s)	850
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	5 cut(s)	13, 512, 530, 730, 893
AluI	AGCT	5 cut(s)	13, 512, 530, 730, 893
Alw26I	GTCTC	2 cut(s)	620, 661
AlwI	GGATC	1 cut(s)	380
ApeKI	GCWGC	5 cut(s)	512, 515, 530, 761, 890
ApoI	RAATTY	2 cut(s)	482, 739
AspLEI	GCGC	2 cut(s)	141, 143
AspS9I	GGNCC	3 cut(s)	116, 248, 546
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	273, 938
AvaII	GGWCC	3 cut(s)	116, 248, 546
BanI	GGYRCC	2 cut(s)	184, 437
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
BbsI	GAAGAC	2 cut(s)	30, 797
BbvCI	CCTCAGC	1 cut(s)	894
BbvI	GCAGC	5 cut(s)	499, 502, 517, 748, 902
BccI	CCATC	2 cut(s)	302, 359
BceAI	ACGGC	2 cut(s)	289, 407
BcgI	CGANNNNNNTGC	2 cut(s)	910, 944
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	620, 661
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	4 cut(s)	93, 189, 335, 572
BisI	GCNGC	5 cut(s)	513, 516, 531, 762, 891
BlsI	GCNGC	5 cut(s)	514, 517, 532, 763, 892
BmcAI	AGTACT	2 cut(s)	91, 97
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	3 cut(s)	116, 248, 546
BmgBI	CACGTC	1 cut(s)	850
BmgT120I	GGNCC	3 cut(s)	116, 248, 546
BmiI	GGNNCC	5 cut(s)	117, 186, 250, 349, 439
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	3 cut(s)	126, 136, 816
BmuI	ACTGGG	1 cut(s)	28
BpiI	GAAGAC	2 cut(s)	30, 797
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	765
Bpu10I	CCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	2 cut(s)	320, 893
BpuMI	CCSGG	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	119, 237, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	4 cut(s)	34, 186, 194, 464
BseDI	CCNNGG	3 cut(s)	119, 237, 765
BseGI	GGATG	2 cut(s)	313, 699
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	90, 299, 885
BseNI	ACTGG	4 cut(s)	34, 186, 194, 464
BsePI	GCGCGC	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	317, 821
BseXI	GCAGC	5 cut(s)	499, 502, 517, 748, 902
Bsh1236I	CGCG	1 cut(s)	141
BshNI	GGYRCC	2 cut(s)	184, 437
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	2 cut(s)	16, 129
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	2 cut(s)	620, 661
BsmFI	GGGAC	2 cut(s)	16, 129
Bsp143I	GATC	3 cut(s)	76, 288, 372
BspACI	CCGC	2 cut(s)	435, 446
BspCNI	CTCAG	3 cut(s)	91, 298, 886
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	5 cut(s)	117, 186, 250, 349, 439
BspPI	GGATC	1 cut(s)	380
BspT107I	GGYRCC	2 cut(s)	184, 437
BsrI	ACTGG	4 cut(s)	34, 186, 194, 464
BssECI	CCNNGG	3 cut(s)	119, 237, 765
BssHII	GCGCGC	1 cut(s)	139
BssMI	GATC	3 cut(s)	76, 288, 372
BssNAI	GTATAC	1 cut(s)	772
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	765
Bst1107I	GTATAC	1 cut(s)	772
Bst4CI	ACNGT	3 cut(s)	502, 541, 631
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	6 cut(s)	141, 269, 510, 535, 585, 831
BstDEI	CTNAG	4 cut(s)	99, 285, 411, 894
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	313, 699
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	141, 143
BstKTI	GATC	3 cut(s)	79, 291, 375
BstMAI	GTCTC	2 cut(s)	620, 661
BstMBI	GATC	3 cut(s)	76, 288, 372
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 149, 273, 896
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	5 cut(s)	499, 502, 517, 748, 902
BstV2I	GAAGAC	2 cut(s)	30, 797
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BstZ17I	GTATAC	1 cut(s)	772
BtgI	CCRYGG	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	850
BtsCI	GGATG	2 cut(s)	313, 699
Cac8I	GCNNGC	6 cut(s)	141, 269, 510, 535, 585, 831
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	141, 143
Cfr13I	GGNCC	3 cut(s)	116, 248, 546
Csp6I	GTAC	7 cut(s)	90, 96, 176, 197, 451, 590, 722
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	1 cut(s)	559
CviQI	GTAC	7 cut(s)	90, 96, 176, 197, 451, 590, 722
DdeI	CTNAG	4 cut(s)	99, 285, 411, 894
DpnI	GATC	3 cut(s)	78, 290, 374
DpnII	GATC	3 cut(s)	76, 288, 372
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	765
Eco47I	GGWCC	3 cut(s)	116, 248, 546
Eco57I	CTGAAG	2 cut(s)	603, 674
EcoT14I	CCWWGG	1 cut(s)	765
EcoT22I	ATGCAT	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	1 cut(s)	562
FaiI	YATR	7 cut(s)	146, 357, 444, 560, 714, 772, 927
FaqI	GGGAC	2 cut(s)	16, 129
FatI	CATG	1 cut(s)	558
FblI	GTMKAC	3 cut(s)	104, 228, 771
Fnu4HI	GCNGC	5 cut(s)	513, 516, 531, 762, 891
FokI	GGATG	2 cut(s)	320, 706
Fsp4HI	GCNGC	5 cut(s)	513, 516, 531, 762, 891
FspBI	CTAG	4 cut(s)	93, 189, 335, 572
GlaI	GCGC	2 cut(s)	140, 142
GluI	GCNGC	5 cut(s)	513, 516, 531, 762, 891
GsuI	CTGGAG	1 cut(s)	765
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	2 cut(s)	141, 143
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	562
Hin6I	GCGC	2 cut(s)	139, 141
HinP1I	GCGC	2 cut(s)	139, 141
HincII	GTYRAC	3 cut(s)	105, 167, 244
HindII	GTYRAC	3 cut(s)	105, 167, 244
HinfI	GANTC	4 cut(s)	101, 607, 707, 862
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	273, 938
Hpy166II	GTNNAC	5 cut(s)	105, 167, 229, 244, 772
Hpy188I	TCNGA	6 cut(s)	17, 81, 288, 480, 550, 932
Hpy188III	TCNNGA	8 cut(s)	7, 114, 335, 345, 397, 559, 782, 910
Hpy8I	GTNNAC	5 cut(s)	105, 167, 229, 244, 772
Hpy99I	CGWCG	5 cut(s)	109, 112, 115, 257, 851
HpyAV	CCTTC	5 cut(s)	155, 485, 596, 649, 653
HpyCH4III	ACNGT	3 cut(s)	502, 541, 631
HpyCH4IV	ACGT	6 cut(s)	107, 155, 255, 453, 849, 878
HpyCH4V	TGCA	4 cut(s)	537, 587, 750, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 149, 273, 896
HpyF3I	CTNAG	4 cut(s)	99, 285, 411, 894
HpySE526I	ACGT	6 cut(s)	107, 155, 255, 453, 849, 878
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	562
HspAI	GCGC	2 cut(s)	139, 141
Kzo9I	GATC	3 cut(s)	76, 288, 372
Lsp1109I	GCAGC	5 cut(s)	499, 502, 517, 748, 902
LweI	GCATC	3 cut(s)	126, 136, 816
MaeI	CTAG	4 cut(s)	93, 189, 335, 572
MaeII	ACGT	6 cut(s)	107, 155, 255, 453, 849, 878
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	3 cut(s)	78, 290, 374
MboI	GATC	3 cut(s)	76, 288, 372
MboII	GAAGA	8 cut(s)	30, 272, 574, 609, 611, 635, 802, 896
MfeI	CAATTG	1 cut(s)	834
MflI	RGATCY	1 cut(s)	372
MluCI	AATT	5 cut(s)	482, 551, 678, 739, 834
MlyI	GAGTC	2 cut(s)	110, 616
MmeI	TCCRAC	1 cut(s)	671
Mph1103I	ATGCAT	1 cut(s)	752
MslI	CAYNNNNRTG	2 cut(s)	413, 755
MspA1I	CMGCKG	1 cut(s)	893
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	834
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	4 cut(s)	10, 149, 273, 896
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	3 cut(s)	76, 288, 372
NlaIII	CATG	1 cut(s)	562
NlaIV	GGNNCC	5 cut(s)	117, 186, 250, 349, 439
NmuCI	GTSAC	1 cut(s)	279
NsiI	ATGCAT	1 cut(s)	752
OliI	CACNNNNGTG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	558
PauI	GCGCGC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	707, 862
PflFI	GACNNNGTC	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	514, 517, 532, 763, 892
PleI	GAGTC	2 cut(s)	109, 615
PpsI	GAGTC	2 cut(s)	109, 615
Ppu21I	YACGTR	1 cut(s)	156
PspN4I	GGNNCC	5 cut(s)	117, 186, 250, 349, 439
PspPI	GGNCC	3 cut(s)	116, 248, 546
PsuI	RGATCY	1 cut(s)	372
PsyI	GACNNNGTC	1 cut(s)	109
PteI	GCGCGC	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	7 cut(s)	91, 97, 177, 198, 452, 591, 723
RsaNI	GTAC	7 cut(s)	90, 96, 176, 197, 451, 590, 722
RseI	CAYNNNNRTG	2 cut(s)	413, 755
SalI	GTCGAC	1 cut(s)	103
SatI	GCNGC	5 cut(s)	513, 516, 531, 762, 891
Sau3AI	GATC	3 cut(s)	76, 288, 372
Sau96I	GGNCC	3 cut(s)	116, 248, 546
ScaI	AGTACT	2 cut(s)	91, 97
SchI	GAGTC	2 cut(s)	110, 616
ScrFI	CCNGG	1 cut(s)	238
SfaNI	GCATC	3 cut(s)	126, 136, 816
SinI	GGWCC	3 cut(s)	116, 248, 546
SmiMI	CAYNNNNRTG	2 cut(s)	413, 755
SmlI	CTYRAG	3 cut(s)	5, 299, 908
SmoI	CTYRAG	3 cut(s)	5, 299, 908
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	5 cut(s)	482, 551, 678, 739, 834
SsiI	CCGC	2 cut(s)	435, 446
SspMI	CTAG	4 cut(s)	93, 189, 335, 572
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	3 cut(s)	502, 541, 631
TaiI	ACGT	6 cut(s)	110, 158, 258, 456, 852, 881
TaqI	TCGA	1 cut(s)	104
TasI	AATT	5 cut(s)	482, 551, 678, 739, 834
TatI	WGTACW	5 cut(s)	89, 95, 175, 589, 721
TfiI	GAWTC	2 cut(s)	707, 862
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	5 cut(s)	512, 515, 530, 761, 890
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	3 cut(s)	547, 575, 803
TspGWI	ACGGA	2 cut(s)	136, 261
Tth111I	GACNNNGTC	1 cut(s)	109
VpaK11BI	GGWCC	3 cut(s)	116, 248, 546
XapI	RAATTY	2 cut(s)	482, 739
XbaI	TCTAGA	1 cut(s)	334
XmiI	GTMKAC	3 cut(s)	104, 228, 771
XspI	CTAG	4 cut(s)	93, 189, 335, 572
ZraI	GACGTC	1 cut(s)	108
ZrmI	AGTACT	2 cut(s)	91, 97
Zsp2I	ATGCAT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.