Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008845

Physical Location & Seq

Genomic Coordinates Reverse (-)

2262705 .. 2265726

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCTCAAGAAGCTCGGAGGTGGTGGGAAGTCCCAGTCTTCCAAGAGAGGGAAAGAGAGTAAGAGCAATGAGAAAGATCAGAGTAAGAGTACTAGTACTGAGTCGACGTCGTCGGGACCACGGAAGCAGCTGTTGATGCGCGCCATAGTTGCTACGAGTGAAGGTCAACTCAAAGTACAACTGGTGCCTAGACCAGTACCCAAAGCAAACGAGGTGCTTGTCAAAGTAGACTACGCCGGGGTCAACGGACCCGACGTTGAAGAGAGCAAGCACGGCAAGTCACCTCAGATCAAGGAACTTGAGGAGGATGGAACTAAAAGCAAGTATTTGGGTCTAGAGTGTTCAGGAACCATCTATGCTCTTGGGGAGGGGATCTCCAAAAAAGACGAGCAAATCTGGAAAAAAGACACTAAGGTGTGTGCCATTGTTTTTGGCGGTGCCTATGCGGAGTACGTTGCTGTTCCAGTAGGACACCTTCTGAAATTCACAACAAAGATTACCGTCAAGCAAGCTGCTGCTATTCCACAAGCTGCTTGCACCGTCTGGTCCGAATTGTTCATGAAGAAAAGGCTAGATGAGGGGCTTGCAGTACAGGAGGAAGAAGGGAGTCGGCTTTCTTCAGGCGAGACAGTTTTGATTCATGGAGGCTGCAGTGGAATTGGCATATTTGCAATTCAGATGGCTAAGTATCAGGGAGCAATTGTATTTGCAACAGCAGGTACCGACGCAAAGATAGCTGAATGTAAACGTCTTGGAGCTGACCTATGCATCAACTATAACAAAAATGATTTTGCTGAAGTGATAAGGGACAGCACTAAAGGCCAAGGCGTTGATGTTATCTTGGATTGCGTTGGGTTTAAGTATTTTCAGAAAAATCTTCAATGCCTGAAGGAAGGTGGGAGACTTATTCAAATTGGTGGCTGTTGGATGACACAATACGATTCTTATGGAAAAGTACAAAAGCTCTTTTCAAATTTCAAATGCATTGATGTGGCTGCCTTGGTATACAGAACTCCAGAGATGAAGACCTCCATTGTTGAGGAGGTTCAGGGGAAAGTGATGCCTGCAATTGAAAATGGCGACGTGAAACTTGTGATTCACAAGGTTTTTACATTTGAAGAAGCAGCTGAGGCACACAAACTCAAGAAAAGTGGCAATCATATCGGAAAGATATTGCTTCACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

395

Amino Acids

42.95

Weight (kDa)

8.93

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	69 - 161	1.6e-09	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	219 - 314	2.5e-27	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	251 - 393	5.1e-25	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02170
rosa_chinensis	RchiOBHm_Chr5g0003051 RchiOBHm_Chr5g0003521
rosa_laevigata	RLG00000031095 RLG00000031097 RLG00000031110
rosa_multiflora	Rmu_co8296325.1_g000001 Rmu_sc0000146.1_g000013 Rmu_sc0004279.1_g000013
rosa_roxburghii	Rroxscaffold_1G00072500
rosa_rugosa	Rorug04G0401800 Rorug04G0402000 Rorug04G0402100
rosa_samantha	Rh5AG024500 Rh5BG027900 Rh5CG027400 Rh5CG033300 Rh5DG027900 Rh6DG004000
rosa_wichuraiana	Rw5G002530 Rw5G002550 Rw5G002620 Rw5G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	707
Acc65I	GGTACC	1 cut(s)	719
AccB1I	GGYRCC	3 cut(s)	184, 437, 719
AccI	GTMKAC	3 cut(s)	104, 228, 1005
AccII	CGCG	1 cut(s)	141
AciI	CCGC	2 cut(s)	435, 446
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	2 cut(s)	482, 973
AcuI	CTGAAG	3 cut(s)	603, 816, 908
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	8 cut(s)	91, 97, 177, 198, 452, 591, 721, 957
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	7 cut(s)	260, 881, 911, 972, 979, 1073, 1118
AhlI	ACTAGT	1 cut(s)	92
AjiI	CACGTC	1 cut(s)	1084
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	8 cut(s)	13, 130, 512, 530, 737, 758, 964, 1127
AluI	AGCT	8 cut(s)	13, 130, 512, 530, 737, 758, 964, 1127
Alw26I	GTCTC	2 cut(s)	620, 895
AlwI	GGATC	1 cut(s)	380
AoxI	GGCC	1 cut(s)	820
ApeKI	GCWGC	7 cut(s)	127, 512, 515, 530, 648, 995, 1124
ApoI	RAATTY	2 cut(s)	482, 973
Asp718I	GGTACC	1 cut(s)	719
AspLEI	GCGC	2 cut(s)	141, 143
AspS9I	GGNCC	3 cut(s)	116, 248, 546
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	273, 1172
AvaII	GGWCC	3 cut(s)	116, 248, 546
BanI	GGYRCC	3 cut(s)	184, 437, 719
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
BbsI	GAAGAC	2 cut(s)	30, 1031
BbvCI	CCTCAGC	1 cut(s)	1128
BbvI	GCAGC	7 cut(s)	139, 499, 502, 517, 635, 982, 1136
BccI	CCATC	3 cut(s)	302, 359, 673
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	1144, 1178
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	2 cut(s)	620, 895
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	4 cut(s)	93, 189, 335, 572
BfmI	CTRYAG	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	707
BisI	GCNGC	7 cut(s)	128, 513, 516, 531, 649, 996, 1125
BlsI	GCNGC	7 cut(s)	129, 514, 517, 532, 650, 997, 1126
BmcAI	AGTACT	2 cut(s)	91, 97
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	3 cut(s)	116, 248, 546
BmgBI	CACGTC	1 cut(s)	1084
BmgT120I	GGNCC	3 cut(s)	116, 248, 546
BmiI	GGNNCC	6 cut(s)	117, 186, 250, 349, 439, 721
BmrFI	CCNGG	1 cut(s)	238
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	3 cut(s)	126, 777, 1050
BmuI	ACTGGG	1 cut(s)	28
BpiI	GAAGAC	2 cut(s)	30, 1031
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	999
Bpu10I	CCTNAGC	1 cut(s)	1128
BpuEI	CTTGAG	2 cut(s)	320, 1127
BpuMI	CCSGG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	4 cut(s)	119, 237, 823, 999
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	4 cut(s)	34, 186, 194, 464
Bse3DI	GCAATG	1 cut(s)	73
BseDI	CCNNGG	4 cut(s)	119, 237, 823, 999
BseGI	GGATG	2 cut(s)	313, 933
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	3 cut(s)	90, 299, 1119
BseNI	ACTGG	4 cut(s)	34, 186, 194, 464
BsePI	GCGCGC	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	317, 1055
BseXI	GCAGC	7 cut(s)	139, 499, 502, 517, 635, 982, 1136
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	822
BshNI	GGYRCC	3 cut(s)	184, 437, 719
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	3 cut(s)	16, 129, 821
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	2 cut(s)	620, 895
BsmFI	GGGAC	3 cut(s)	16, 129, 821
BsnI	GGCC	1 cut(s)	822
Bsp143I	GATC	3 cut(s)	76, 288, 372
BspACI	CCGC	2 cut(s)	435, 446
BspANI	GGCC	1 cut(s)	822
BspCNI	CTCAG	3 cut(s)	91, 298, 1120
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	6 cut(s)	117, 186, 250, 349, 439, 721
BspMAI	CTGCAG	1 cut(s)	653
BspMI	ACCTGC	1 cut(s)	707
BspPI	GGATC	1 cut(s)	380
BspT107I	GGYRCC	3 cut(s)	184, 437, 719
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	4 cut(s)	34, 186, 194, 464
BssECI	CCNNGG	4 cut(s)	119, 237, 823, 999
BssHII	GCGCGC	1 cut(s)	139
BssMI	GATC	3 cut(s)	76, 288, 372
BssNAI	GTATAC	1 cut(s)	1006
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	2 cut(s)	823, 999
Bst1107I	GTATAC	1 cut(s)	1006
Bst4CI	ACNGT	3 cut(s)	502, 541, 631
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	6 cut(s)	141, 269, 510, 535, 585, 1065
BstDEI	CTNAG	5 cut(s)	99, 285, 411, 684, 1128
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	313, 933
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	141, 143
BstKTI	GATC	3 cut(s)	79, 291, 375
BstMAI	GTCTC	2 cut(s)	620, 895
BstMBI	GATC	3 cut(s)	76, 288, 372
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 136, 149, 273, 734, 819, 1130
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	649
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	7 cut(s)	139, 499, 502, 517, 635, 982, 1136
BstV2I	GAAGAC	2 cut(s)	30, 1031
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BstZ17I	GTATAC	1 cut(s)	1006
BsuRI	GGCC	1 cut(s)	822
BtgI	CCRYGG	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	1084
BtsCI	GGATG	2 cut(s)	313, 933
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	658
BveI	ACCTGC	1 cut(s)	707
Cac8I	GCNNGC	6 cut(s)	141, 269, 510, 535, 585, 1065
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	141, 143
Cfr13I	GGNCC	3 cut(s)	116, 248, 546
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	8 cut(s)	90, 96, 176, 197, 451, 590, 720, 956
CspCI	CAANNNNNGTGG	2 cut(s)	1132, 1167
CviAII	CATG	2 cut(s)	559, 641
CviQI	GTAC	8 cut(s)	90, 96, 176, 197, 451, 590, 720, 956
DdeI	CTNAG	5 cut(s)	99, 285, 411, 684, 1128
DpnI	GATC	3 cut(s)	78, 290, 374
DpnII	GATC	3 cut(s)	76, 288, 372
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	2 cut(s)	823, 999
Eco47I	GGWCC	3 cut(s)	116, 248, 546
Eco57I	CTGAAG	3 cut(s)	603, 816, 908
EcoT14I	CCWWGG	2 cut(s)	823, 999
EcoT22I	ATGCAT	2 cut(s)	770, 986
ErhI	CCWWGG	2 cut(s)	823, 999
FaeI	CATG	2 cut(s)	562, 644
FaqI	GGGAC	3 cut(s)	16, 129, 821
FatI	CATG	2 cut(s)	558, 640
FblI	GTMKAC	3 cut(s)	104, 228, 1005
Fnu4HI	GCNGC	7 cut(s)	128, 513, 516, 531, 649, 996, 1125
FokI	GGATG	2 cut(s)	320, 940
Fsp4HI	GCNGC	7 cut(s)	128, 513, 516, 531, 649, 996, 1125
FspBI	CTAG	4 cut(s)	93, 189, 335, 572
GlaI	GCGC	2 cut(s)	140, 142
GluI	GCNGC	7 cut(s)	128, 513, 516, 531, 649, 996, 1125
GsuI	CTGGAG	1 cut(s)	999
HaeIII	GGCC	1 cut(s)	822
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	734
HhaI	GCGC	2 cut(s)	141, 143
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	562, 644
Hin6I	GCGC	2 cut(s)	139, 141
HinP1I	GCGC	2 cut(s)	139, 141
HincII	GTYRAC	3 cut(s)	105, 167, 244
HindII	GTYRAC	3 cut(s)	105, 167, 244
HinfI	GANTC	5 cut(s)	101, 607, 637, 941, 1096
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	273, 1172
Hpy166II	GTNNAC	6 cut(s)	105, 167, 229, 244, 746, 1006
Hpy188I	TCNGA	8 cut(s)	17, 81, 288, 480, 550, 678, 870, 1166
Hpy188III	TCNNGA	8 cut(s)	7, 114, 335, 345, 397, 559, 1016, 1144
Hpy8I	GTNNAC	6 cut(s)	105, 167, 229, 244, 746, 1006
Hpy99I	CGWCG	6 cut(s)	109, 112, 115, 257, 728, 1085
HpyAV	CCTTC	5 cut(s)	155, 485, 596, 883, 887
HpyCH4III	ACNGT	3 cut(s)	502, 541, 631
HpyCH4IV	ACGT	5 cut(s)	107, 255, 453, 748, 1083
HpyCH4V	TGCA	8 cut(s)	537, 587, 651, 671, 710, 768, 984, 1067
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 136, 149, 273, 734, 819, 1130
HpyF3I	CTNAG	5 cut(s)	99, 285, 411, 684, 1128
HpySE526I	ACGT	5 cut(s)	107, 255, 453, 748, 1083
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	562, 644
HspAI	GCGC	2 cut(s)	139, 141
KpnI	GGTACC	1 cut(s)	723
Kzo9I	GATC	3 cut(s)	76, 288, 372
LmnI	GCTCC	2 cut(s)	695, 755
Lsp1109I	GCAGC	7 cut(s)	139, 499, 502, 517, 635, 982, 1136
LweI	GCATC	3 cut(s)	126, 777, 1050
MaeI	CTAG	4 cut(s)	93, 189, 335, 572
MaeII	ACGT	5 cut(s)	107, 255, 453, 748, 1083
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	3 cut(s)	78, 290, 374
MboI	GATC	3 cut(s)	76, 288, 372
MboII	GAAGA	8 cut(s)	30, 272, 574, 609, 611, 869, 1036, 1130
MfeI	CAATTG	2 cut(s)	699, 1068
MflI	RGATCY	1 cut(s)	372
MluCI	AATT	8 cut(s)	482, 551, 657, 672, 699, 912, 973, 1068
MlyI	GAGTC	2 cut(s)	110, 616
MmeI	TCCRAC	1 cut(s)	905
Mph1103I	ATGCAT	2 cut(s)	770, 986
MseI	TTAA	1 cut(s)	858
MslI	CAYNNNNRTG	2 cut(s)	413, 989
MspA1I	CMGCKG	2 cut(s)	130, 1127
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	238
MunI	CAATTG	2 cut(s)	699, 1068
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	7 cut(s)	10, 136, 149, 273, 734, 819, 1130
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	3 cut(s)	76, 288, 372
NlaIII	CATG	2 cut(s)	562, 644
NlaIV	GGNNCC	6 cut(s)	117, 186, 250, 349, 439, 721
NmuCI	GTSAC	1 cut(s)	279
NsiI	ATGCAT	2 cut(s)	770, 986
OliI	CACNNNNGTG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	558
PauI	GCGCGC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	637, 941, 1096
PflFI	GACNNNGTC	1 cut(s)	109
PkrI	GCNGC	7 cut(s)	129, 514, 517, 532, 650, 997, 1126
PleI	GAGTC	2 cut(s)	109, 615
PpsI	GAGTC	2 cut(s)	109, 615
PspN4I	GGNNCC	6 cut(s)	117, 186, 250, 349, 439, 721
PspPI	GGNCC	3 cut(s)	116, 248, 546
PstI	CTGCAG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	372
PsyI	GACNNNGTC	1 cut(s)	109
PteI	GCGCGC	1 cut(s)	139
PvuII	CAGCTG	2 cut(s)	130, 1127
RsaI	GTAC	8 cut(s)	91, 97, 177, 198, 452, 591, 721, 957
RsaNI	GTAC	8 cut(s)	90, 96, 176, 197, 451, 590, 720, 956
RseI	CAYNNNNRTG	2 cut(s)	413, 989
SalI	GTCGAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	858
SatI	GCNGC	7 cut(s)	128, 513, 516, 531, 649, 996, 1125
Sau3AI	GATC	3 cut(s)	76, 288, 372
Sau96I	GGNCC	3 cut(s)	116, 248, 546
ScaI	AGTACT	2 cut(s)	91, 97
SchI	GAGTC	2 cut(s)	110, 616
ScrFI	CCNGG	1 cut(s)	238
SfaNI	GCATC	3 cut(s)	126, 777, 1050
SfcI	CTRYAG	1 cut(s)	649
SinI	GGWCC	3 cut(s)	116, 248, 546
SmiMI	CAYNNNNRTG	2 cut(s)	413, 989
SmlI	CTYRAG	3 cut(s)	5, 299, 1142
SmoI	CTYRAG	3 cut(s)	5, 299, 1142
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	8 cut(s)	482, 551, 657, 672, 699, 912, 973, 1068
SsiI	CCGC	2 cut(s)	435, 446
SspMI	CTAG	4 cut(s)	93, 189, 335, 572
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	2 cut(s)	823, 999
TaaI	ACNGT	3 cut(s)	502, 541, 631
TaiI	ACGT	5 cut(s)	110, 258, 456, 751, 1086
TaqI	TCGA	1 cut(s)	104
TasI	AATT	8 cut(s)	482, 551, 657, 672, 699, 912, 973, 1068
TatI	WGTACW	5 cut(s)	89, 95, 175, 589, 955
TfiI	GAWTC	3 cut(s)	637, 941, 1096
Tru1I	TTAA	1 cut(s)	858
Tru9I	TTAA	1 cut(s)	858
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	7 cut(s)	127, 512, 515, 530, 648, 995, 1124
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	4 cut(s)	547, 575, 629, 1037
TspGWI	ACGGA	2 cut(s)	136, 261
TspRI	CASTG	1 cut(s)	658
Tth111I	GACNNNGTC	1 cut(s)	109
VpaK11BI	GGWCC	3 cut(s)	116, 248, 546
XapI	RAATTY	2 cut(s)	482, 973
XbaI	TCTAGA	1 cut(s)	334
XmiI	GTMKAC	3 cut(s)	104, 228, 1005
XspI	CTAG	4 cut(s)	93, 189, 335, 572
ZraI	GACGTC	1 cut(s)	108
ZrmI	AGTACT	2 cut(s)	91, 97
Zsp2I	ATGCAT	2 cut(s)	770, 986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.