Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8296325.1

Orthogroup ID

OG0008845

Physical Location & Seq

Genomic Coordinates Forward (+)

132 .. 596

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8296325.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgagtggctctgtcacagaattagatctccgtgtggtgctttcaaagcgccttaccatccaagcggctggtttgcgagtcagaagtccacaaaacaaggcagtaataattagggaggtggaggaccatgtgtggcctgcaattgtggctggcaaggtgaaacctgtgatctacaagcatttccctttgtctgaagctgcagaggctcaccagttattggaaagtagccagcatattggaaagattctactttttccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

86

Amino Acids

9.53

Weight (kDa)

9.6

Isoelectric Point (pI)

58.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02170
rosa_chinensis	RchiOBHm_Chr5g0003051 RchiOBHm_Chr5g0003521
rosa_laevigata	RLG00000031095 RLG00000031097 RLG00000031110
rosa_multiflora	Rmu_co8296325.1_g000001 Rmu_sc0000146.1_g000013 Rmu_sc0004279.1_g000013
rosa_roxburghii	Rroxscaffold_1G00072500
rosa_rugosa	Rorug04G0401800 Rorug04G0402000 Rorug04G0402100
rosa_samantha	Rh5AG024500 Rh5BG027900 Rh5CG027400 Rh5CG033300 Rh5DG027900 Rh6DG004000
rosa_wichuraiana	Rw5G002530 Rw5G002550 Rw5G002620 Rw5G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	45
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	169, 200
AvaII	GGWCC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	52
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	66, 198
BlsI	GCNGC	2 cut(s)	67, 199
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	25, 168
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	2 cut(s)	25, 168
BstC8I	GCNNGC	3 cut(s)	138, 151, 230
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	28, 171
BstMBI	GATC	2 cut(s)	25, 168
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 146, 203
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	2 cut(s)	68, 236
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	3 cut(s)	138, 151, 230
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	124
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	7 cut(s)	9, 68, 136, 149, 197, 206, 228
CviKI_1	RGCY	7 cut(s)	9, 68, 136, 149, 197, 206, 228
DpnI	GATC	2 cut(s)	27, 170
DpnII	GATC	2 cut(s)	25, 168
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	213
FaeI	CATG	1 cut(s)	131
FaiI	YATR	2 cut(s)	129, 234
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	66, 198
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	66, 198
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	66, 198
HaeII	RGCGCY	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	78, 244
HphI	GGTGA	2 cut(s)	169, 200
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	83, 193
Hpy8I	GTNNAC	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	140, 200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 146, 203
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	25, 168
LpnPI	CCDG	6 cut(s)	54, 135, 150, 177, 224, 242
Lsp1109I	GCAGC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	27, 170
MboI	GATC	2 cut(s)	25, 168
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	3 cut(s)	20, 108, 141
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	3 cut(s)	109, 115, 196
MunI	CAATTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	46, 146, 203
NdeII	GATC	2 cut(s)	25, 168
NlaIII	CATG	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	67, 199
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	25
SatI	GCNGC	2 cut(s)	66, 198
Sau3AI	GATC	2 cut(s)	25, 168
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	87
SetI	ASST	4 cut(s)	120, 159, 166, 199
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	124
Sse9I	AATT	3 cut(s)	20, 108, 141
SsiI	CCGC	1 cut(s)	65
TasI	AATT	3 cut(s)	20, 108, 141
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	13
TspGWI	ACGGA	2 cut(s)	20, 246
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.