Rw5G002530

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0008845
Physical Location & Seq
Forward (+)
2220432 .. 2221216
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002530.1

Sequence Viewer

Length: 630 bp
ATGCTCAAGAAGCTCGGAAGTGGTGGGAAGTCACAGTCTTCCAAGAGAGGGAAAGAGAGTAAGAGCAATGAGAAAGATCAGAGTAAGAGTACTAGTACTGAGTCGACATCGTCGGGAACACGGAAGGAGCTGTTGATGCGCGCCATAGTTGCTACGAGTGAAGGTGGCGAAGCTGAGTTGCTCAAAGTACAAATTGTGCCCAGACCAGTACCCAAAGCAAACGAGGTACTTGTCAAACTAGACTACACAGGGGTCAACGGACCCGACGTTGAAGAGAGCAAGCACGGCAAGTCACCTCAGATCAAGGAACTTGAGGAGGATGGAACTAAAAGCAAGTATTTGGGTCTAGAATGTTCAGGAAGCATCTGTGCTCTTGGGGAAGGAATGTCCAAAGAAGACAAGCAAACCTGGAAAAAAGACACTAAGGTGTGTGCCATTGTTTTTGGTGGTGCATATGCGGAGTACGTTGCTGTTCCAGTAGGACACCTTCTGAAATTCACAACAAATTTTACTGTCAAGCAAGCAACTGCTATTCCACAAGCTGCTTGCACCGTCTGGTCGGAATTGTTCATGAAGAACAGGCTAGATGAGGGGCTTGCAGTACAGGAGGAAGCGAGACAGTTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

209

Amino Acids

22.73

Weight (kDa)

8.55

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 73 - 165 3.7e-08 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 104
AccII CGCG 1 cut(s) 141
AciI CCGC 1 cut(s) 458
AcsI RAATTY 2 cut(s) 494, 505
AfaI GTAC 7 cut(s) 91, 97, 189, 210, 228, 464, 603
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 272
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 1 cut(s) 407
AleI CACNNNNGTG 1 cut(s) 425
AluBI AGCT 4 cut(s) 13, 130, 173, 542
AluI AGCT 4 cut(s) 13, 130, 173, 542
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 1 cut(s) 610
ApeKI GCWGC 1 cut(s) 542
ApoI RAATTY 2 cut(s) 494, 505
AspLEI GCGC 2 cut(s) 141, 143
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 471, 503
BbsI GAAGAC 2 cut(s) 30, 402
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 529
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 610
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 4 cut(s) 93, 239, 347, 584
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
BmcAI AGTACT 2 cut(s) 91, 97
Bme1390I CCNGG 1 cut(s) 409
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 409
BmsI GCATC 2 cut(s) 126, 372
BpiI GAAGAC 2 cut(s) 30, 402
BpuEI CTTGAG 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 2 cut(s) 206, 476
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 409
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 90, 165, 311
BseNI ACTGG 2 cut(s) 206, 476
BsePI GCGCGC 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 610
Bsp1286I GDGCHC 2 cut(s) 201, 373
Bsp143I GATC 2 cut(s) 76, 300
BspACI CCGC 1 cut(s) 458
BspCNI CTCAG 3 cut(s) 91, 166, 310
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 2 cut(s) 206, 476
BssHII GCGCGC 1 cut(s) 139
BssMI GATC 2 cut(s) 76, 300
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 4 cut(s) 36, 514, 553, 621
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 5 cut(s) 141, 281, 522, 547, 597
BstDEI CTNAG 4 cut(s) 99, 174, 297, 423
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 2 cut(s) 141, 143
BstKTI GATC 2 cut(s) 79, 303
BstMAI GTCTC 1 cut(s) 610
BstMBI GATC 2 cut(s) 76, 300
BstMWI GCNNNNNNNGC 4 cut(s) 10, 136, 149, 285
BstNI CCWGG 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 407
BstSLI GKGCMC 1 cut(s) 201
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 529
BstV2I GAAGAC 2 cut(s) 30, 402
BtsCI GGATG 1 cut(s) 325
Cac8I GCNNGC 5 cut(s) 141, 281, 522, 547, 597
CciI TCATGA 1 cut(s) 570
CfoI GCGC 2 cut(s) 141, 143
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 7 cut(s) 90, 96, 188, 209, 227, 463, 602
CviAII CATG 1 cut(s) 571
CviJI RGCY 6 cut(s) 13, 130, 173, 542, 583, 595
CviKI_1 RGCY 6 cut(s) 13, 130, 173, 542, 583, 595
CviQI GTAC 7 cut(s) 90, 96, 188, 209, 227, 463, 602
DdeI CTNAG 4 cut(s) 99, 174, 297, 423
DpnI GATC 2 cut(s) 78, 302
DpnII GATC 2 cut(s) 76, 300
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 407
FaeI CATG 1 cut(s) 574
FaiI YATR 4 cut(s) 146, 454, 456, 572
FatI CATG 1 cut(s) 570
FauNDI CATATG 1 cut(s) 454
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 543
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 543
FspBI CTAG 4 cut(s) 93, 239, 347, 584
GlaI GCGC 2 cut(s) 140, 142
GluI GCNGC 1 cut(s) 543
HhaI GCGC 2 cut(s) 141, 143
Hin1II CATG 1 cut(s) 574
Hin6I GCGC 2 cut(s) 139, 141
HinP1I GCGC 2 cut(s) 139, 141
HincII GTYRAC 2 cut(s) 105, 256
HindII GTYRAC 2 cut(s) 105, 256
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 2 cut(s) 105, 256
Hpy188I TCNGA 5 cut(s) 17, 81, 300, 492, 562
Hpy188III TCNNGA 5 cut(s) 7, 114, 347, 357, 571
Hpy8I GTNNAC 2 cut(s) 105, 256
Hpy99I CGWCG 2 cut(s) 115, 269
HpyAV CCTTC 4 cut(s) 118, 155, 374, 497
HpyCH4III ACNGT 4 cut(s) 36, 514, 553, 621
HpyCH4IV ACGT 2 cut(s) 267, 465
HpyCH4V TGCA 3 cut(s) 452, 549, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 136, 149, 285
HpyF3I CTNAG 4 cut(s) 99, 174, 297, 423
HpySE526I ACGT 2 cut(s) 267, 465
Hsp92II CATG 1 cut(s) 574
HspAI GCGC 2 cut(s) 139, 141
Kzo9I GATC 2 cut(s) 76, 300
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 2 cut(s) 126, 372
MaeI CTAG 4 cut(s) 93, 239, 347, 584
MaeII ACGT 2 cut(s) 267, 465
MaeIII GTNAC 2 cut(s) 30, 291
MalI GATC 2 cut(s) 78, 302
MboI GATC 2 cut(s) 76, 300
MboII GAAGA 4 cut(s) 30, 284, 407, 586
MhlI GDGCHC 2 cut(s) 201, 373
MluCI AATT 4 cut(s) 192, 494, 505, 563
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 7 cut(s) 41, 217, 306, 307, 310, 583, 601
MslI CAYNNNNRTG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 409
MvaI CCWGG 1 cut(s) 409
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 10, 136, 149, 285
NdeI CATATG 1 cut(s) 454
NdeII GATC 2 cut(s) 76, 300
NlaIII CATG 1 cut(s) 574
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 2 cut(s) 30, 291
OliI CACNNNNGTG 1 cut(s) 425
PagI TCATGA 1 cut(s) 570
PauI GCGCGC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PflFI GACNNNGTC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 544
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 109
PteI GCGCGC 1 cut(s) 139
RsaI GTAC 7 cut(s) 91, 97, 189, 210, 228, 464, 603
RsaNI GTAC 7 cut(s) 90, 96, 188, 209, 227, 463, 602
RseI CAYNNNNRTG 1 cut(s) 425
SalI GTCGAC 1 cut(s) 103
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 2 cut(s) 76, 300
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 2 cut(s) 91, 97
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 409
SduI GDGCHC 2 cut(s) 201, 373
SfaNI GCATC 2 cut(s) 126, 372
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 2 cut(s) 5, 311
SmoI CTYRAG 2 cut(s) 5, 311
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 4 cut(s) 192, 494, 505, 563
SsiI CCGC 1 cut(s) 458
SspMI CTAG 4 cut(s) 93, 239, 347, 584
StyD4I CCNGG 1 cut(s) 407
TaaI ACNGT 4 cut(s) 36, 514, 553, 621
TaiI ACGT 2 cut(s) 270, 468
TaqI TCGA 1 cut(s) 104
TasI AATT 4 cut(s) 192, 494, 505, 563
TatI WGTACW 4 cut(s) 89, 95, 187, 601
TseFI GTSAC 2 cut(s) 30, 291
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 2 cut(s) 30, 291
TspDTI ATGAA 2 cut(s) 559, 587
TspGWI ACGGA 2 cut(s) 136, 273
Tth111I GACNNNGTC 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 2 cut(s) 494, 505
XbaI TCTAGA 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 104
XspI CTAG 4 cut(s) 93, 239, 347, 584
ZrmI AGTACT 2 cut(s) 91, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.