Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008845

Physical Location & Seq

Genomic Coordinates Forward (+)

484015 .. 484925

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG004000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCCAAGGCAGCATCTTGGGATGGCCGGCCTCAAACTCTTGACGTCGTGTCCGTCACCGTCACCGGCTGGTTTGCAATACAGAAGTCCAGAAAACAAAGCAGTAATTGTTAGAGAGGTGGAGGAGAATGTGTGGCCTGCAATTGTGGCTGGCAAGGTGAAAACTGTTGTCTACAAGCGTTTCCCATTATCTGAAGCCGCTGAGGCTCACCAGCTAATGGAAACTAGCCAGCATATTGGAAAGATCTTTTTCCGTGATGCTTCAGACCTCATGCACCCAGGTTCTATGTTCTGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

99

Amino Acids

11.08

Weight (kDa)

7.94

Isoelectric Point (pI)

66.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N_2	PF13602	41 - 82	1.5e-10	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02170
rosa_chinensis	RchiOBHm_Chr5g0003051 RchiOBHm_Chr5g0003521
rosa_laevigata	RLG00000031095 RLG00000031097 RLG00000031110
rosa_multiflora	Rmu_co8296325.1_g000001 Rmu_sc0000146.1_g000013 Rmu_sc0004279.1_g000013
rosa_roxburghii	Rroxscaffold_1G00072500
rosa_rugosa	Rorug04G0401800 Rorug04G0402000 Rorug04G0402100
rosa_samantha	Rh5AG024500 Rh5BG027900 Rh5CG027400 Rh5CG033300 Rh5DG027900 Rh6DG004000
rosa_wichuraiana	Rw5G002530 Rw5G002550 Rw5G002620 Rw5G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	24
AcuI	CTGAAG	2 cut(s)	213, 246
AcyI	GRCGYC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	217
AhdI	GACNNNNNGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
AoxI	GGCC	3 cut(s)	24, 28, 134
ApeKI	GCWGC	1 cut(s)	10
AsuHPI	GGTGA	4 cut(s)	48, 54, 169, 200
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	203
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	2 cut(s)	11, 198
BlsI	GCNGC	2 cut(s)	12, 199
Bme1390I	CCNGG	1 cut(s)	279
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	22, 247
Bpu10I	CCTNAGC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	5, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	2 cut(s)	26, 64
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	5, 277
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	3 cut(s)	26, 30, 136
BsiSI	CCGG	2 cut(s)	27, 65
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	3 cut(s)	26, 30, 136
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	3 cut(s)	26, 30, 136
BspCNI	CTCAG	1 cut(s)	193
BsrFI	RCCGGY	2 cut(s)	26, 64
BssAI	RCCGGY	2 cut(s)	26, 64
BssECI	CCNNGG	2 cut(s)	5, 277
BssMI	GATC	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	60, 166
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	4 cut(s)	28, 138, 151, 230
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 146, 203
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	26, 30, 136
BtsCI	GGATG	1 cut(s)	27
Cac8I	GCNNGC	4 cut(s)	28, 138, 151, 230
Cfr10I	RCCGGY	2 cut(s)	26, 64
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	9 cut(s)	26, 30, 68, 136, 149, 197, 206, 214, 228
CviKI_1	RGCY	9 cut(s)	26, 30, 68, 136, 149, 197, 206, 214, 228
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
DriI	GACNNNNNGTC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	5
Eco57I	CTGAAG	2 cut(s)	213, 246
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	234, 272, 287
FatI	CATG	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	11, 198
FokI	GGATG	1 cut(s)	34
FseI	GGCCGGCC	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	11, 198
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	2 cut(s)	11, 198
HaeIII	GGCC	3 cut(s)	26, 30, 136
HapII	CCGG	2 cut(s)	27, 65
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	274
HpaII	CCGG	2 cut(s)	27, 65
HphI	GGTGA	4 cut(s)	48, 54, 169, 200
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	193, 265
Hpy188III	TCNNGA	2 cut(s)	40, 89
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	60, 166
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	3 cut(s)	76, 140, 274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 146, 203
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	274
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	243
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	22, 247
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	54, 60
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	2 cut(s)	105, 141
MnlI	CCTC	5 cut(s)	41, 109, 115, 196, 278
MroNI	GCCGGC	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	2 cut(s)	27, 65
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	10, 146, 203
NaeI	GCCGGC	1 cut(s)	28
NdeII	GATC	1 cut(s)	243
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	54, 60
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	12, 199
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	243
RigI	GGCCGGCC	1 cut(s)	30
SatI	GCNGC	2 cut(s)	11, 198
Sau3AI	GATC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	6 cut(s)	47, 120, 159, 216, 270, 283
SfaNI	GCATC	2 cut(s)	22, 247
Sse9I	AATT	2 cut(s)	105, 141
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	60, 166
TaiI	ACGT	1 cut(s)	47
TasI	AATT	2 cut(s)	105, 141
TauI	GCSGC	1 cut(s)	200
TseFI	GTSAC	2 cut(s)	54, 60
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	2 cut(s)	54, 60
TspGWI	ACGGA	2 cut(s)	42, 242
Van91I	CCANNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	225
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.