RLG00000031095

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008845
Physical Location & Seq
Forward (+)
1968302 .. 1988270
19969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031095

Sequence Viewer

Length: 915 bp
ATGCTGAAGAAGCTCGGAAGTGGTGGGAAGTCACAGTCTTCCAAGAGAGGGAAAGAGAGTAAGAGCAATGAGAAAGATCAGAGTAAGAGTACTAGTACTGAGTCGACATCGTCTGGAACACGGAAGGAGCTGTTGATGCGCGCCATAGTTGCTACGAGTGAAGGTGGCGAAGCTGAGTTGCTCAAAGTACAAATTGTGCCCAGACCAGTACCCAAAGCAAACGAGGGGTCAACGGCCGACGTTGAAGAGAGCAAGCACGGCAAGTCACCTCAGATCAAGGAACTTGAGGAGGATGGAACTAAAAGCAAGTATTTGGGTCTAGAATGTTCAGGAAGCATCTGTGCTCTTGGGGAAGGAATGTCCAAAGAAGACAAGCAAACCTGGAAAAAAGACACTAAGGTGTGTGCCATTGTTTTTGGTGGTGCATATGCGGAGTACGTTGCTGTTCCAGTAGGACACCTTCTGAAATTCACAACAAATTTTACTGTCAAGCAAGCTACTGCTATTCCACAAGCTGCTTGCACCGTCTGGTCGGAATTGTTCATGAAGAACAAGCTAGATGAGGGGCTTGCAGTACAGGAGGAAGTAGGGAGTCGGCTTTCTTCAGGCGAGACAGTTTTGAGAACCTGTCAACAAAATTATTCTAGTAATGTATTTGTACAAATATTAATCAACCAAGATACTTACCACATTTTTGCCAGGTGGTTCACGAGGATGGCTGCCTTGGTATACAGAACTCCAGATATGAAGACCTCCATTGTTGAGGAAGTTCAGGAGAAAGTGATGCCTGCAATTGAGAATGGCGACGTGAAACTTGTGATTCACAAGCAGGTTTTTGCATTCGAACAAGCAGCCGAGGCACACAAACTCAAGAAAAGTGGCAATCATATCGGAAAGATATTGCTTCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

305

Amino Acids

33.35

Weight (kDa)

8.77

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N_2 PF13602 248 - 302 1.8e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 820
AccI GTMKAC 2 cut(s) 104, 729
AccII CGCG 1 cut(s) 141
AciI CCGC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 2 cut(s) 467, 478
AcuI CTGAAG 2 cut(s) 26, 588
AfaI GTAC 7 cut(s) 91, 97, 189, 210, 437, 576, 660
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 245
AhlI ACTAGT 1 cut(s) 92
AjiI CACGTC 1 cut(s) 808
AjnI CCWGG 2 cut(s) 380, 698
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 6 cut(s) 13, 130, 173, 497, 515, 556
AluI AGCT 6 cut(s) 13, 130, 173, 497, 515, 556
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 605
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 515, 719, 851
ApoI RAATTY 2 cut(s) 467, 478
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AseI ATTAAT 1 cut(s) 668
AspLEI GCGC 2 cut(s) 141, 143
AsuHPI GGTGA 1 cut(s) 258
AsuII TTCGAA 1 cut(s) 843
BaeGI GKGCMC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 3 cut(s) 30, 375, 755
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 3 cut(s) 502, 706, 863
BccI CCATC 2 cut(s) 287, 709
BceAI ACGGC 2 cut(s) 249, 274
BcgI CGANNNNNNTGC 2 cut(s) 871, 905
BciT130I CCWGG 2 cut(s) 382, 700
BcoDI GTCTC 1 cut(s) 605
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 4 cut(s) 93, 320, 557, 645
BfuAI ACCTGC 1 cut(s) 820
BisI GCNGC 3 cut(s) 516, 720, 852
BlsI GCNGC 3 cut(s) 517, 721, 853
BmcAI AGTACT 2 cut(s) 91, 97
Bme1390I CCNGG 2 cut(s) 382, 700
BmgBI CACGTC 1 cut(s) 808
BmrFI CCNGG 2 cut(s) 382, 700
BmsI GCATC 3 cut(s) 126, 345, 774
BpiI GAAGAC 3 cut(s) 30, 375, 755
BpmI CTGGAG 1 cut(s) 723
Bpu14I TTCGAA 1 cut(s) 843
BpuEI CTTGAG 2 cut(s) 305, 854
BsaJI CCNNGG 2 cut(s) 723, 855
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 2 cut(s) 206, 449
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 2 cut(s) 382, 700
BseDI CCNNGG 2 cut(s) 723, 855
BseGI GGATG 2 cut(s) 298, 720
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 90, 165, 284
BseNI ACTGG 2 cut(s) 206, 449
BsePI GCGCGC 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 201
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 3 cut(s) 502, 706, 863
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 839
BsnI GGCC 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 843
Bsp1286I GDGCHC 2 cut(s) 201, 346
Bsp1407I TGTACA 1 cut(s) 658
Bsp143I GATC 2 cut(s) 76, 273
BspACI CCGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 91, 166, 283
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 543
BspMI ACCTGC 1 cut(s) 820
BspT104I TTCGAA 1 cut(s) 843
BsrDI GCAATG 1 cut(s) 73
BsrGI TGTACA 1 cut(s) 658
BsrI ACTGG 2 cut(s) 206, 449
BssECI CCNNGG 2 cut(s) 723, 855
BssHII GCGCGC 1 cut(s) 139
BssMI GATC 2 cut(s) 76, 273
BssNAI GTATAC 1 cut(s) 730
BssSI CACGAG 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 723
Bst1107I GTATAC 1 cut(s) 730
Bst2BI CACGAG 1 cut(s) 709
Bst2UI CCWGG 2 cut(s) 382, 700
Bst4CI ACNGT 4 cut(s) 36, 487, 526, 616
Bst6I CTCTTC 1 cut(s) 240
BstAUI TGTACA 1 cut(s) 658
BstBI TTCGAA 1 cut(s) 843
BstC8I GCNNGC 6 cut(s) 141, 254, 495, 520, 570, 789
BstDEI CTNAG 4 cut(s) 99, 174, 270, 396
BstF5I GGATG 2 cut(s) 298, 720
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 2 cut(s) 141, 143
BstKTI GATC 2 cut(s) 79, 276
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 2 cut(s) 76, 273
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 5 cut(s) 10, 136, 149, 258, 857
BstNI CCWGG 2 cut(s) 382, 700
BstSCI CCNGG 2 cut(s) 380, 698
BstSLI GKGCMC 1 cut(s) 201
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 3 cut(s) 502, 706, 863
BstV2I GAAGAC 3 cut(s) 30, 375, 755
BstZ17I GTATAC 1 cut(s) 730
BstZI CGGCCG 1 cut(s) 234
BsuRI GGCC 1 cut(s) 236
BtrI CACGTC 1 cut(s) 808
BtsCI GGATG 2 cut(s) 298, 720
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 6 cut(s) 141, 254, 495, 520, 570, 789
CciI TCATGA 1 cut(s) 543
CfoI GCGC 2 cut(s) 141, 143
Csp6I GTAC 7 cut(s) 90, 96, 188, 209, 436, 575, 659
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviAII CATG 1 cut(s) 544
CviQI GTAC 7 cut(s) 90, 96, 188, 209, 436, 575, 659
DdeI CTNAG 4 cut(s) 99, 174, 270, 396
DpnI GATC 2 cut(s) 78, 275
DpnII GATC 2 cut(s) 76, 273
EaeI YGGCCR 1 cut(s) 234
EagI CGGCCG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EclXI CGGCCG 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 723
Eco52I CGGCCG 1 cut(s) 234
Eco57I CTGAAG 2 cut(s) 26, 588
EcoRII CCWGG 2 cut(s) 380, 698
EcoT14I CCWWGG 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 1 cut(s) 547
FaiI YATR 7 cut(s) 146, 427, 429, 545, 730, 746, 888
FatI CATG 1 cut(s) 543
FauNDI CATATG 1 cut(s) 427
FblI GTMKAC 2 cut(s) 104, 729
Fnu4HI GCNGC 3 cut(s) 516, 720, 852
FokI GGATG 2 cut(s) 305, 727
Fsp4HI GCNGC 3 cut(s) 516, 720, 852
FspBI CTAG 4 cut(s) 93, 320, 557, 645
GlaI GCGC 2 cut(s) 140, 142
GluI GCNGC 3 cut(s) 516, 720, 852
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 1 cut(s) 236
HhaI GCGC 2 cut(s) 141, 143
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 2 cut(s) 139, 141
HinP1I GCGC 2 cut(s) 139, 141
HincII GTYRAC 3 cut(s) 105, 231, 632
HindII GTYRAC 3 cut(s) 105, 231, 632
HinfI GANTC 3 cut(s) 101, 592, 820
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 5 cut(s) 105, 231, 632, 708, 730
Hpy188I TCNGA 6 cut(s) 17, 81, 273, 465, 535, 893
Hpy188III TCNNGA 9 cut(s) 114, 320, 330, 544, 709, 740, 773, 871, 912
Hpy8I GTNNAC 5 cut(s) 105, 231, 632, 708, 730
Hpy99I CGWCG 2 cut(s) 242, 809
HpyAV CCTTC 4 cut(s) 118, 155, 347, 470
HpyCH4III ACNGT 4 cut(s) 36, 487, 526, 616
HpyCH4IV ACGT 3 cut(s) 240, 438, 807
HpyCH4V TGCA 5 cut(s) 425, 522, 572, 791, 839
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 136, 149, 258, 857
HpyF3I CTNAG 4 cut(s) 99, 174, 270, 396
HpySE526I ACGT 3 cut(s) 240, 438, 807
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 2 cut(s) 139, 141
Kzo9I GATC 2 cut(s) 76, 273
LmnI GCTCC 1 cut(s) 127
Lsp1109I GCAGC 3 cut(s) 502, 706, 863
LweI GCATC 3 cut(s) 126, 345, 774
MaeI CTAG 4 cut(s) 93, 320, 557, 645
MaeII ACGT 3 cut(s) 240, 438, 807
MaeIII GTNAC 2 cut(s) 30, 264
MalI GATC 2 cut(s) 78, 275
MboI GATC 2 cut(s) 76, 273
MboII GAAGA 7 cut(s) 19, 30, 257, 380, 559, 594, 760
MfeI CAATTG 1 cut(s) 792
MhlI GDGCHC 2 cut(s) 201, 346
MluCI AATT 6 cut(s) 192, 467, 478, 536, 637, 792
MlyI GAGTC 2 cut(s) 110, 601
MmeI TCCRAC 1 cut(s) 513
MseI TTAA 1 cut(s) 668
MslI CAYNNNNRTG 2 cut(s) 398, 713
MspR9I CCNGG 2 cut(s) 382, 700
MunI CAATTG 1 cut(s) 792
Mva1269I GAATGC 1 cut(s) 839
MvaI CCWGG 2 cut(s) 382, 700
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 5 cut(s) 10, 136, 149, 258, 857
NdeI CATATG 1 cut(s) 427
NdeII GATC 2 cut(s) 76, 273
NlaIII CATG 1 cut(s) 547
NmeAIII GCCGAG 1 cut(s) 880
NmuCI GTSAC 2 cut(s) 30, 264
NspV TTCGAA 1 cut(s) 843
OliI CACNNNNGTG 1 cut(s) 398
PagI TCATGA 1 cut(s) 543
PauI GCGCGC 1 cut(s) 139
PctI GAATGC 1 cut(s) 839
PfeI GAWTC 1 cut(s) 820
PflFI GACNNNGTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 517, 721, 853
PleI GAGTC 2 cut(s) 109, 600
PpsI GAGTC 2 cut(s) 109, 600
PshBI ATTAAT 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 380, 698
PspGI CCWGG 2 cut(s) 380, 698
PsyI GACNNNGTC 1 cut(s) 109
PteI GCGCGC 1 cut(s) 139
RsaI GTAC 7 cut(s) 91, 97, 189, 210, 437, 576, 660
RsaNI GTAC 7 cut(s) 90, 96, 188, 209, 436, 575, 659
RseI CAYNNNNRTG 2 cut(s) 398, 713
SalI GTCGAC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 3 cut(s) 516, 720, 852
Sau3AI GATC 2 cut(s) 76, 273
ScaI AGTACT 2 cut(s) 91, 97
SchI GAGTC 2 cut(s) 110, 601
ScrFI CCNGG 2 cut(s) 382, 700
SduI GDGCHC 2 cut(s) 201, 346
SfaNI GCATC 3 cut(s) 126, 345, 774
SfuI TTCGAA 1 cut(s) 843
SmiMI CAYNNNNRTG 2 cut(s) 398, 713
SmlI CTYRAG 2 cut(s) 284, 869
SmoI CTYRAG 2 cut(s) 284, 869
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 6 cut(s) 192, 467, 478, 536, 637, 792
SsiI CCGC 1 cut(s) 431
SspI AATATT 1 cut(s) 666
SspMI CTAG 4 cut(s) 93, 320, 557, 645
StyD4I CCNGG 2 cut(s) 380, 698
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 4 cut(s) 36, 487, 526, 616
TaiI ACGT 3 cut(s) 243, 441, 810
TaqI TCGA 2 cut(s) 104, 843
TasI AATT 6 cut(s) 192, 467, 478, 536, 637, 792
TatI WGTACW 5 cut(s) 89, 95, 187, 574, 658
TfiI GAWTC 1 cut(s) 820
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TseFI GTSAC 2 cut(s) 30, 264
TseI GCWGC 3 cut(s) 515, 719, 851
Tsp45I GTSAC 2 cut(s) 30, 264
TspDTI ATGAA 3 cut(s) 532, 560, 761
TspGWI ACGGA 1 cut(s) 136
Tth111I GACNNNGTC 1 cut(s) 109
VspI ATTAAT 1 cut(s) 668
XapI RAATTY 2 cut(s) 467, 478
XbaI TCTAGA 1 cut(s) 319
XmiI GTMKAC 2 cut(s) 104, 729
XspI CTAG 4 cut(s) 93, 320, 557, 645
ZrmI AGTACT 2 cut(s) 91, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.