Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008845

Physical Location & Seq

Genomic Coordinates Forward (+)

1693585 .. 1694742

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG024500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCTCAAGAAGCTCGGAGGTGGTGGGAAGTCCCAGTCTTTCAAGAGAGGGAAAGAGAGTAAGAGCAATGAGAAAGACCAGATGGCTGCCTTGGTATACAGAACTCCAGAGATGAAGACCTCCATTGTTGAGGAGGTTCAGGGGAAAGTGATGCCTGCAATTGAGAATGGCGACGTGAAACTTGTGATTCACAAGGTTTTTACATTCGAAGAAGCAGCTGAGGCACACAAACTCAAGAAAAGTGGCAATCATATCGGAAAGGTGATCCTTGATGGACCAAGAAACTCTTCAAAGATTTTGTTATCCAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

104

Amino Acids

11.37

Weight (kDa)

9.64

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N_2	PF13602	22 - 90	8.3e-11	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02170
rosa_chinensis	RchiOBHm_Chr5g0003051 RchiOBHm_Chr5g0003521
rosa_laevigata	RLG00000031095 RLG00000031097 RLG00000031110
rosa_multiflora	Rmu_co8296325.1_g000001 Rmu_sc0000146.1_g000013 Rmu_sc0004279.1_g000013
rosa_roxburghii	Rroxscaffold_1G00072500
rosa_rugosa	Rorug04G0401800 Rorug04G0402000 Rorug04G0402100
rosa_samantha	Rh5AG024500 Rh5BG027900 Rh5CG027400 Rh5CG033300 Rh5DG027900 Rh6DG004000
rosa_wichuraiana	Rw5G002530 Rw5G002550 Rw5G002620 Rw5G002880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	43, 291
AjiI	CACGTC	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	3 cut(s)	13, 218, 309
AluI	AGCT	3 cut(s)	13, 218, 309
AlwI	GGATC	1 cut(s)	259
ApeKI	GCWGC	2 cut(s)	86, 215
Asp700I	GAANNNNTTC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	274
AsuII	TTCGAA	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	122
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	73, 227
BccI	CCATC	2 cut(s)	76, 266
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BisI	GCNGC	2 cut(s)	87, 216
BlsI	GCNGC	2 cut(s)	88, 217
Bme18I	GGWCC	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	275
BmrI	ACTGGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	73, 227
BslFI	GGGAC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	264
BssNAI	GTATAC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	90
Bst1107I	GTATAC	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	267
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 221
BstV1I	GCAGC	2 cut(s)	73, 227
BstV2I	GAAGAC	1 cut(s)	122
BstZ17I	GTATAC	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	275
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviJI	RGCY	4 cut(s)	13, 86, 218, 309
CviKI_1	RGCY	4 cut(s)	13, 86, 218, 309
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaiI	YATR	2 cut(s)	97, 252
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FaqI	GGGAC	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	87, 216
Fsp4HI	GCNGC	2 cut(s)	87, 216
GluI	GCNGC	2 cut(s)	87, 216
GsuI	CTGGAG	1 cut(s)	90
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	17, 257
Hpy188III	TCNNGA	4 cut(s)	7, 43, 107, 235
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 221
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	264
LpnPI	CCDG	5 cut(s)	47, 92, 120, 125, 168
Lsp1109I	GCAGC	2 cut(s)	73, 227
LweI	GCATC	1 cut(s)	141
MaeII	ACGT	1 cut(s)	174
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	3 cut(s)	127, 221, 279
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	6 cut(s)	11, 41, 124, 127, 130, 214
MroXI	GAANNNNTTC	1 cut(s)	286
MspA1I	CMGCKG	2 cut(s)	218, 309
MunI	CAATTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	10, 221
NdeII	GATC	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	88, 217
PspPI	GGNCC	1 cut(s)	275
PvuII	CAGCTG	2 cut(s)	218, 309
SatI	GCNGC	2 cut(s)	87, 216
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	1 cut(s)	275
SetI	ASST	9 cut(s)	15, 22, 122, 138, 177, 198, 220, 264, 311
SfaNI	GCATC	1 cut(s)	141
SfuI	TTCGAA	1 cut(s)	207
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	5, 233
SmoI	CTYRAG	2 cut(s)	5, 233
Sse9I	AATT	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	86, 215
TspDTI	ATGAA	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.