No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0047181 |
| rosa_multiflora | Rmu_ssc0000342.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830 |
| rosa_samantha | Rh6BG198300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 42 |
| AcoI | YGGCCR | 1 cut(s) | 72 |
| AfaI | GTAC | 1 cut(s) | 122 |
| AgsI | TTSAA | 2 cut(s) | 138, 182 |
| AleI | CACNNNNGTG | 1 cut(s) | 44 |
| AluBI | AGCT | 4 cut(s) | 28, 82, 134, 178 |
| AluI | AGCT | 4 cut(s) | 28, 82, 134, 178 |
| Alw21I | GWGCWC | 2 cut(s) | 30, 84 |
| AoxI | GGCC | 2 cut(s) | 60, 72 |
| AsuHPI | GGTGA | 1 cut(s) | 31 |
| BalI | TGGCCA | 1 cut(s) | 74 |
| BanII | GRGCYC | 2 cut(s) | 30, 84 |
| BbsI | GAAGAC | 1 cut(s) | 88 |
| Bbv12I | GWGCWC | 2 cut(s) | 30, 84 |
| BccI | CCATC | 2 cut(s) | 26, 122 |
| BfaI | CTAG | 1 cut(s) | 193 |
| BglII | AGATCT | 1 cut(s) | 86 |
| BmsI | GCATC | 1 cut(s) | 23 |
| BpiI | GAAGAC | 1 cut(s) | 88 |
| BsaJI | CCNNGG | 1 cut(s) | 75 |
| BseDI | CCNNGG | 1 cut(s) | 75 |
| BseGI | GGATG | 1 cut(s) | 14 |
| BseMII | CTCAG | 1 cut(s) | 97 |
| Bsh1285I | CGRYCG | 1 cut(s) | 110 |
| BshFI | GGCC | 2 cut(s) | 62, 74 |
| BsiEI | CGRYCG | 1 cut(s) | 110 |
| BsiHKAI | GWGCWC | 2 cut(s) | 30, 84 |
| BsnI | GGCC | 2 cut(s) | 62, 74 |
| Bsp1286I | GDGCHC | 2 cut(s) | 30, 84 |
| Bsp1407I | TGTACA | 1 cut(s) | 120 |
| Bsp143I | GATC | 2 cut(s) | 86, 107 |
| BspACI | CCGC | 1 cut(s) | 42 |
| BspANI | GGCC | 2 cut(s) | 62, 74 |
| BspCNI | CTCAG | 1 cut(s) | 96 |
| BsrGI | TGTACA | 1 cut(s) | 120 |
| BssECI | CCNNGG | 1 cut(s) | 75 |
| BssMI | GATC | 2 cut(s) | 86, 107 |
| BssT1I | CCWWGG | 1 cut(s) | 75 |
| Bst6I | CTCTTC | 2 cut(s) | 108, 157 |
| BstAUI | TGTACA | 1 cut(s) | 120 |
| BstDEI | CTNAG | 1 cut(s) | 83 |
| BstF5I | GGATG | 1 cut(s) | 14 |
| BstKTI | GATC | 2 cut(s) | 89, 110 |
| BstMBI | GATC | 2 cut(s) | 86, 107 |
| BstMCI | CGRYCG | 1 cut(s) | 110 |
| BstV2I | GAAGAC | 1 cut(s) | 88 |
| BstX2I | RGATCY | 1 cut(s) | 86 |
| BstYI | RGATCY | 1 cut(s) | 86 |
| BsuRI | GGCC | 2 cut(s) | 62, 74 |
| BtsCI | GGATG | 1 cut(s) | 14 |
| BtsI | GCAGTG | 1 cut(s) | 51 |
| BtsIMutI | CAGTG | 1 cut(s) | 51 |
| Csp6I | GTAC | 1 cut(s) | 121 |
| CviJI | RGCY | 6 cut(s) | 28, 62, 74, 82, 134, 178 |
| CviKI_1 | RGCY | 6 cut(s) | 28, 62, 74, 82, 134, 178 |
| CviQI | GTAC | 1 cut(s) | 121 |
| DdeI | CTNAG | 1 cut(s) | 83 |
| DpnI | GATC | 2 cut(s) | 88, 109 |
| DpnII | GATC | 2 cut(s) | 86, 107 |
| EaeI | YGGCCR | 1 cut(s) | 72 |
| Eam1104I | CTCTTC | 2 cut(s) | 108, 157 |
| EarI | CTCTTC | 2 cut(s) | 108, 157 |
| Ecl136II | GAGCTC | 2 cut(s) | 28, 82 |
| Eco130I | CCWWGG | 1 cut(s) | 75 |
| Eco24I | GRGCYC | 2 cut(s) | 30, 84 |
| Eco53kI | GAGCTC | 2 cut(s) | 28, 82 |
| EcoICRI | GAGCTC | 2 cut(s) | 28, 82 |
| EcoT14I | CCWWGG | 1 cut(s) | 75 |
| EcoT38I | GRGCYC | 2 cut(s) | 30, 84 |
| ErhI | CCWWGG | 1 cut(s) | 75 |
| FriOI | GRGCYC | 2 cut(s) | 30, 84 |
| FspBI | CTAG | 1 cut(s) | 193 |
| HaeIII | GGCC | 2 cut(s) | 62, 74 |
| HindIII | AAGCTT | 2 cut(s) | 132, 176 |
| HinfI | GANTC | 1 cut(s) | 53 |
| HphI | GGTGA | 1 cut(s) | 31 |
| Hpy166II | GTNNAC | 2 cut(s) | 39, 121 |
| Hpy188I | TCNGA | 2 cut(s) | 68, 86 |
| Hpy8I | GTNNAC | 2 cut(s) | 39, 121 |
| HpyAV | CCTTC | 3 cut(s) | 73, 151, 176 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 14 |
| HpyF3I | CTNAG | 1 cut(s) | 83 |
| Kzo9I | GATC | 2 cut(s) | 86, 107 |
| LmnI | GCTCC | 1 cut(s) | 79 |
| LweI | GCATC | 1 cut(s) | 23 |
| MaeI | CTAG | 1 cut(s) | 193 |
| MalI | GATC | 2 cut(s) | 88, 109 |
| MboI | GATC | 2 cut(s) | 86, 107 |
| MboII | GAAGA | 3 cut(s) | 88, 95, 144 |
| MflI | RGATCY | 1 cut(s) | 86 |
| MhlI | GDGCHC | 2 cut(s) | 30, 84 |
| MlsI | TGGCCA | 1 cut(s) | 74 |
| MluNI | TGGCCA | 1 cut(s) | 74 |
| Mox20I | TGGCCA | 1 cut(s) | 74 |
| MscI | TGGCCA | 1 cut(s) | 74 |
| MseI | TTAA | 1 cut(s) | 174 |
| MslI | CAYNNNNRTG | 1 cut(s) | 44 |
| Msp20I | TGGCCA | 1 cut(s) | 74 |
| NdeII | GATC | 2 cut(s) | 86, 107 |
| OliI | CACNNNNGTG | 1 cut(s) | 44 |
| PfeI | GAWTC | 1 cut(s) | 53 |
| Ple19I | CGATCG | 1 cut(s) | 110 |
| Psp124BI | GAGCTC | 2 cut(s) | 30, 84 |
| PsuI | RGATCY | 1 cut(s) | 86 |
| PvuI | CGATCG | 1 cut(s) | 110 |
| RsaI | GTAC | 1 cut(s) | 122 |
| RsaNI | GTAC | 1 cut(s) | 121 |
| RseI | CAYNNNNRTG | 1 cut(s) | 44 |
| SacI | GAGCTC | 2 cut(s) | 30, 84 |
| SaqAI | TTAA | 1 cut(s) | 174 |
| Sau3AI | GATC | 2 cut(s) | 86, 107 |
| SduI | GDGCHC | 2 cut(s) | 30, 84 |
| SetI | ASST | 6 cut(s) | 30, 84, 136, 143, 180, 187 |
| SfaNI | GCATC | 1 cut(s) | 23 |
| SgeI | CNNG | 7 cut(s) | 37, 46, 88, 104, 130, 143, 191 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 44 |
| SsiI | CCGC | 1 cut(s) | 42 |
| SspMI | CTAG | 1 cut(s) | 193 |
| SstI | GAGCTC | 2 cut(s) | 30, 84 |
| StyI | CCWWGG | 1 cut(s) | 75 |
| TaqI | TCGA | 2 cut(s) | 106, 110 |
| TatI | WGTACW | 1 cut(s) | 120 |
| TfiI | GAWTC | 1 cut(s) | 53 |
| Tru1I | TTAA | 1 cut(s) | 174 |
| Tru9I | TTAA | 1 cut(s) | 174 |
| TscAI | CASTG | 1 cut(s) | 51 |
| TspDTI | ATGAA | 1 cut(s) | 45 |
| TspRI | CASTG | 1 cut(s) | 51 |
| XspI | CTAG | 1 cut(s) | 193 |