Rmu_ssc0000342.1_g000003

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000342.1
OG0012694
Physical Location & Seq
Reverse (-)
20950 .. 22753
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000342.1_g000003.1.cds

Sequence Viewer

Length: 1212 bp
atgcagttggttgcatccatcaacgagctcatcgggttcaccgtagtggtagattcatcggccgtcggagtggccaaggagctcggatctattgtcttctctcttcgatcgaccatcgtgtacaaacatcaagcttcaaccttctctttctcttccattttcacacttttggtcaagcttgaaggtgatttccagatgtccggtgttcttcgcaacccgcccagacagcgccgctcaaccgcccaggcgcttagcggcccgtccaggcgcctagtggcccgcccaggcggccgcctaacctcagcccgcctaatcccagcgattaagcattcctcgatgtgggacgcttgggatccggatatcgcctctaggggtatcggaacccccagttgggagctttcctcgaagcaggcatcttgctcggatgaggagagctatgccttgcttcaattcaagcatagctttttgattaacatagatgctttacttcatgatgatgctcattcaaagacttcatcatggaaacccgccaaaggaggaaatagcagctgctgctcacgggagggtgtcgaatgtgatgaacggacgggtcatgtgattggccatgatcttagtagtagtcttctctatggctctatcaactccaacaacaccttcttccatcttgttcatctccagaggctcaagcttgctgataatcacttcaattactgtcaaattcctactaccaatagaaattttccaaggctcaggtatctcgacctcactagctctgtgctttttggtccaatcccattagaagtttcacacttgttcaagttgtcatccttggacctttctgataacttacttaatggtccattttctgattcattggcaaaccttacaaaactgacatacttgtcgcttgaaaataacaatttcagtggaagtactttgtcatgggttggtatgctaacaaaacttactcaattgcgtcttgaaggcaccaatttaattggtaacatcccattttctctaggcaacctcacacatctcacttttcttgattttccttataatcaactaactggtccaatcccatcttggctaggtaaccttagaagtctagcttatctagatcttagaataaacaaatatcataattcaattccagaaccaatattcaatcttatggatctcaagggctgtcacccctcaaattttgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

403

Amino Acids

44.66

Weight (kDa)

8.18

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1059
AasI GACNNNNNNGTC 1 cut(s) 901
AccB1I GGYRCC 2 cut(s) 267, 986
AccBSI CCGCTC 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 9 cut(s) 218, 232, 240, 255, 280, 288, 292, 307, 528
AclWI GGATC 4 cut(s) 94, 347, 360, 1185
AcoI YGGCCR 4 cut(s) 60, 72, 289, 601
AcsI RAATTY 3 cut(s) 717, 736, 1201
AcyI GRCGYC 1 cut(s) 268
AfaI GTAC 2 cut(s) 122, 934
AfiI CCNNNNNNNGG 4 cut(s) 339, 390, 391, 533
AjnI CCWGG 3 cut(s) 243, 263, 283
AjuI GAANNNNNNNTTGG 4 cut(s) 373, 405, 638, 670
AleI CACNNNNGTG 1 cut(s) 44
Alw21I GWGCWC 2 cut(s) 30, 84
AlwI GGATC 4 cut(s) 94, 347, 360, 1185
AlwNI CAGNNNCTG 1 cut(s) 552
Aor13HI TCCGGA 1 cut(s) 355
AoxI GGCC 6 cut(s) 60, 72, 256, 276, 289, 601
ApeKI GCWGC 3 cut(s) 546, 549, 552
ApoI RAATTY 3 cut(s) 717, 736, 1201
AspLEI GCGC 3 cut(s) 231, 250, 270
AspS9I GGNCC 6 cut(s) 257, 277, 785, 832, 857, 1073
AsuHPI GGTGA 3 cut(s) 31, 197, 1184
AvaII GGWCC 4 cut(s) 785, 832, 857, 1073
BalI TGGCCA 2 cut(s) 74, 603
BamHI GGATCC 1 cut(s) 352
BanI GGYRCC 2 cut(s) 267, 986
BanII GRGCYC 2 cut(s) 30, 84
BbsI GAAGAC 2 cut(s) 88, 614
Bbv12I GWGCWC 2 cut(s) 30, 84
BbvCI CCTCAGC 1 cut(s) 301
BbvI GCAGC 3 cut(s) 536, 539, 558
BccI CCATC 4 cut(s) 26, 122, 669, 1090
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 402, 436
BciT130I CCWGG 3 cut(s) 245, 265, 285
BfaI CTAG 7 cut(s) 272, 369, 768, 1019, 1091, 1109, 1118
BfoI RGCGCY 3 cut(s) 232, 251, 271
BglI GCCNNNNNGGC 1 cut(s) 288
BglII AGATCT 1 cut(s) 1120
BisI GCNGC 7 cut(s) 232, 256, 289, 292, 547, 550, 553
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 7 cut(s) 233, 257, 290, 293, 548, 551, 554
BmcAI AGTACT 1 cut(s) 934
Bme1390I CCNGG 3 cut(s) 245, 265, 285
Bme18I GGWCC 4 cut(s) 785, 832, 857, 1073
BmgT120I GGNCC 6 cut(s) 257, 277, 785, 832, 857, 1073
BmiI GGNNCC 4 cut(s) 269, 354, 382, 988
BmrFI CCNGG 3 cut(s) 245, 265, 285
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 4 cut(s) 23, 422, 469, 487
BmuI ACTGGG 1 cut(s) 381
BpiI GAAGAC 2 cut(s) 88, 614
BplI GAGNNNNNCTC 2 cut(s) 386, 418
BpmI CTGGAG 1 cut(s) 659
Bpu10I CCTNAGC 2 cut(s) 301, 749
Bpu1102I GCTNAGC 1 cut(s) 251
BpuEI CTTGAG 2 cut(s) 668, 1166
BsaHI GRCGYC 1 cut(s) 268
BsaJI CCNNGG 5 cut(s) 75, 243, 283, 743, 828
BsaWI WCCGGW 2 cut(s) 200, 355
Bsc4I CCNNNNNNNGG 4 cut(s) 339, 390, 391, 533
Bse1I ACTGG 2 cut(s) 387, 1075
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 3 cut(s) 245, 265, 285
BseDI CCNNGG 5 cut(s) 75, 243, 283, 743, 828
BseGI GGATG 4 cut(s) 14, 430, 824, 1005
BseLI CCNNNNNNNGG 4 cut(s) 339, 390, 391, 533
BseMII CTCAG 2 cut(s) 315, 763
BseNI ACTGG 2 cut(s) 387, 1075
BseRI GAGGAG 1 cut(s) 443
BseX3I CGGCCG 2 cut(s) 60, 289
BseXI GCAGC 3 cut(s) 536, 539, 558
BseYI CCCAGC 1 cut(s) 316
Bsh1285I CGRYCG 3 cut(s) 63, 110, 292
BshFI GGCC 6 cut(s) 62, 74, 258, 278, 291, 603
BshNI GGYRCC 2 cut(s) 267, 986
BsiEI CGRYCG 3 cut(s) 63, 110, 292
BsiHKAI GWGCWC 2 cut(s) 30, 84
BsiSI CCGG 2 cut(s) 201, 356
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 4 cut(s) 339, 390, 391, 533
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 6 cut(s) 62, 74, 258, 278, 291, 603
Bsp1286I GDGCHC 2 cut(s) 30, 84
Bsp13I TCCGGA 1 cut(s) 355
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 6 cut(s) 86, 107, 352, 607, 1120, 1177
Bsp1720I GCTNAGC 1 cut(s) 251
BspACI CCGC 9 cut(s) 218, 232, 240, 255, 280, 288, 292, 307, 528
BspANI GGCC 6 cut(s) 62, 74, 258, 278, 291, 603
BspCNI CTCAG 2 cut(s) 314, 762
BspEI TCCGGA 1 cut(s) 355
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 4 cut(s) 269, 354, 382, 988
BspPI GGATC 4 cut(s) 94, 347, 360, 1185
BspT107I GGYRCC 2 cut(s) 267, 986
BsrBI CCGCTC 1 cut(s) 234
BsrGI TGTACA 1 cut(s) 120
BsrI ACTGG 2 cut(s) 387, 1075
BssECI CCNNGG 5 cut(s) 75, 243, 283, 743, 828
BssMI GATC 6 cut(s) 86, 107, 352, 607, 1120, 1177
BssNI GRCGYC 1 cut(s) 268
BssT1I CCWWGG 3 cut(s) 75, 743, 828
Bst2UI CCWGG 3 cut(s) 245, 265, 285
Bst4CI ACNGT 2 cut(s) 43, 713
Bst6I CTCTTC 2 cut(s) 108, 157
BstACI GRCGYC 1 cut(s) 268
BstAPI GCANNNNNTGC 1 cut(s) 552
BstAUI TGTACA 1 cut(s) 120
BstC8I GCNNGC 4 cut(s) 280, 307, 411, 690
BstDEI CTNAG 6 cut(s) 251, 301, 611, 749, 1100, 1124
BstEII GGTNACC 1 cut(s) 1094
BstF5I GGATG 4 cut(s) 14, 430, 824, 1005
BstH2I RGCGCY 3 cut(s) 232, 251, 271
BstHHI GCGC 3 cut(s) 231, 250, 270
BstKTI GATC 6 cut(s) 89, 110, 355, 610, 1123, 1180
BstMBI GATC 6 cut(s) 86, 107, 352, 607, 1120, 1177
BstMCI CGRYCG 3 cut(s) 63, 110, 292
BstMWI GCNNNNNNNGC 3 cut(s) 226, 288, 552
BstNI CCWGG 3 cut(s) 245, 265, 285
BstPI GGTNACC 1 cut(s) 1094
BstSCI CCNGG 3 cut(s) 243, 263, 283
BstV1I GCAGC 3 cut(s) 536, 539, 558
BstV2I GAAGAC 2 cut(s) 88, 614
BstX2I RGATCY 4 cut(s) 86, 352, 1120, 1177
BstYI RGATCY 4 cut(s) 86, 352, 1120, 1177
BstZI CGGCCG 2 cut(s) 60, 289
BsuRI GGCC 6 cut(s) 62, 74, 258, 278, 291, 603
BtsCI GGATG 4 cut(s) 14, 430, 824, 1005
BtsIMutI CAGTG 1 cut(s) 931
Cac8I GCNNGC 4 cut(s) 280, 307, 411, 690
CaiI CAGNNNCTG 1 cut(s) 552
CciI TCATGA 1 cut(s) 490
CciNI GCGGCCGC 1 cut(s) 289
CfoI GCGC 3 cut(s) 231, 250, 270
Cfr13I GGNCC 6 cut(s) 257, 277, 785, 832, 857, 1073
CseI GACGC 2 cut(s) 353, 965
Csp6I GTAC 2 cut(s) 121, 933
CspCI CAANNNNNGTGG 2 cut(s) 907, 942
CviAII CATG 5 cut(s) 491, 519, 593, 605, 942
CviQI GTAC 2 cut(s) 121, 933
DdeI CTNAG 6 cut(s) 251, 301, 611, 749, 1100, 1124
DinI GGCGCC 1 cut(s) 269
DpnI GATC 6 cut(s) 88, 109, 354, 609, 1122, 1179
DpnII GATC 6 cut(s) 86, 107, 352, 607, 1120, 1177
DrdI GACNNNNNNGTC 1 cut(s) 901
DseDI GACNNNNNNGTC 1 cut(s) 901
EaeI YGGCCR 4 cut(s) 60, 72, 289, 601
EagI CGGCCG 2 cut(s) 60, 289
Eam1104I CTCTTC 2 cut(s) 108, 157
EarI CTCTTC 2 cut(s) 108, 157
Ecl136II GAGCTC 2 cut(s) 28, 82
EclXI CGGCCG 2 cut(s) 60, 289
Eco130I CCWWGG 3 cut(s) 75, 743, 828
Eco24I GRGCYC 2 cut(s) 30, 84
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 4 cut(s) 785, 832, 857, 1073
Eco52I CGGCCG 2 cut(s) 60, 289
Eco53kI GAGCTC 2 cut(s) 28, 82
Eco91I GGTNACC 1 cut(s) 1094
EcoICRI GAGCTC 2 cut(s) 28, 82
EcoO65I GGTNACC 1 cut(s) 1094
EcoRII CCWGG 3 cut(s) 243, 263, 283
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 75, 743, 828
EcoT38I GRGCYC 2 cut(s) 30, 84
EgeI GGCGCC 1 cut(s) 269
EheI GGCGCC 1 cut(s) 269
ErhI CCWWGG 3 cut(s) 75, 743, 828
FaeI CATG 5 cut(s) 494, 522, 596, 608, 945
FalI AAGNNNNNCTT 4 cut(s) 446, 478, 1096, 1128
FaqI GGGAC 1 cut(s) 356
FatI CATG 5 cut(s) 490, 518, 592, 604, 941
FauI CCCGC 4 cut(s) 225, 287, 314, 535
Fnu4HI GCNGC 7 cut(s) 232, 256, 289, 292, 547, 550, 553
FokI GGATG 3 cut(s) 437, 811, 992
FriOI GRGCYC 2 cut(s) 30, 84
Fsp4HI GCNGC 7 cut(s) 232, 256, 289, 292, 547, 550, 553
FspBI CTAG 7 cut(s) 272, 369, 768, 1019, 1091, 1109, 1118
GlaI GCGC 3 cut(s) 230, 249, 269
GluI GCNGC 7 cut(s) 232, 256, 289, 292, 547, 550, 553
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 659
HaeII RGCGCY 3 cut(s) 232, 251, 271
HaeIII GGCC 6 cut(s) 62, 74, 258, 278, 291, 603
HapII CCGG 2 cut(s) 201, 356
HgaI GACGC 2 cut(s) 353, 965
HhaI GCGC 3 cut(s) 231, 250, 270
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 5 cut(s) 494, 522, 596, 608, 945
Hin6I GCGC 3 cut(s) 229, 248, 268
HinP1I GCGC 3 cut(s) 229, 248, 268
HindIII AAGCTT 3 cut(s) 132, 176, 686
HinfI GANTC 2 cut(s) 53, 869
HpaII CCGG 2 cut(s) 201, 356
HphI GGTGA 3 cut(s) 31, 197, 1184
Hpy166II GTNNAC 2 cut(s) 39, 121
Hpy188I TCNGA 6 cut(s) 68, 86, 380, 424, 841, 868
Hpy188III TCNNGA 9 cut(s) 193, 356, 491, 676, 758, 980, 1046, 1118, 1154
Hpy8I GTNNAC 2 cut(s) 39, 121
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 151, 176, 664, 977
HpyCH4III ACNGT 2 cut(s) 43, 713
HpyCH4V TGCA 2 cut(s) 4, 14
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 288, 552
HpyF3I CTNAG 6 cut(s) 251, 301, 611, 749, 1100, 1124
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 5 cut(s) 494, 522, 596, 608, 945
HspAI GCGC 3 cut(s) 229, 248, 268
KasI GGCGCC 1 cut(s) 267
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 6 cut(s) 86, 107, 352, 607, 1120, 1177
LmnI GCTCC 2 cut(s) 79, 394
Lsp1109I GCAGC 3 cut(s) 536, 539, 558
LweI GCATC 4 cut(s) 23, 422, 469, 487
MaeI CTAG 7 cut(s) 272, 369, 768, 1019, 1091, 1109, 1118
MaeIII GTNAC 3 cut(s) 1001, 1094, 1190
MalI GATC 6 cut(s) 88, 109, 354, 609, 1122, 1179
MbiI CCGCTC 1 cut(s) 234
MboI GATC 6 cut(s) 86, 107, 352, 607, 1120, 1177
MboII GAAGA 6 cut(s) 88, 95, 144, 200, 614, 649
MfeI CAATTG 1 cut(s) 971
MflI RGATCY 4 cut(s) 86, 352, 1120, 1177
MhlI GDGCHC 2 cut(s) 30, 84
MlsI TGGCCA 2 cut(s) 74, 603
MluNI TGGCCA 2 cut(s) 74, 603
Mly113I GGCGCC 1 cut(s) 268
MmeI TCCRAC 2 cut(s) 46, 669
Mox20I TGGCCA 2 cut(s) 74, 603
MroI TCCGGA 1 cut(s) 355
MscI TGGCCA 2 cut(s) 74, 603
MseI TTAA 4 cut(s) 324, 471, 852, 995
MslI CAYNNNNRTG 2 cut(s) 44, 495
Msp20I TGGCCA 2 cut(s) 74, 603
MspA1I CMGCKG 1 cut(s) 549
MspI CCGG 2 cut(s) 201, 356
MspR9I CCNGG 3 cut(s) 245, 265, 285
MunI CAATTG 1 cut(s) 971
Mva1269I GAATGC 1 cut(s) 328
MvaI CCWGG 3 cut(s) 245, 265, 285
MwoI GCNNNNNNNGC 3 cut(s) 226, 288, 552
NarI GGCGCC 1 cut(s) 268
NdeII GATC 6 cut(s) 86, 107, 352, 607, 1120, 1177
NlaIII CATG 5 cut(s) 494, 522, 596, 608, 945
NlaIV GGNNCC 4 cut(s) 269, 354, 382, 988
NmuCI GTSAC 1 cut(s) 1190
NotI GCGGCCGC 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 44
PagI TCATGA 1 cut(s) 490
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 53, 869
PkrI GCNGC 7 cut(s) 233, 257, 290, 293, 548, 551, 554
Ple19I CGATCG 1 cut(s) 110
PluTI GGCGCC 1 cut(s) 271
PsiI TTATAA 1 cut(s) 1059
Psp124BI GAGCTC 2 cut(s) 30, 84
Psp6I CCWGG 3 cut(s) 243, 263, 283
PspEI GGTNACC 1 cut(s) 1094
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 3 cut(s) 243, 263, 283
PspN4I GGNNCC 4 cut(s) 269, 354, 382, 988
PspPI GGNCC 6 cut(s) 257, 277, 785, 832, 857, 1073
PstNI CAGNNNCTG 1 cut(s) 552
PsuI RGATCY 4 cut(s) 86, 352, 1120, 1177
PvuI CGATCG 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 549
RsaI GTAC 2 cut(s) 122, 934
RsaNI GTAC 2 cut(s) 121, 933
RseI CAYNNNNRTG 2 cut(s) 44, 495
SacI GAGCTC 2 cut(s) 30, 84
SaqAI TTAA 4 cut(s) 324, 471, 852, 995
SatI GCNGC 7 cut(s) 232, 256, 289, 292, 547, 550, 553
Sau3AI GATC 6 cut(s) 86, 107, 352, 607, 1120, 1177
Sau96I GGNCC 6 cut(s) 257, 277, 785, 832, 857, 1073
ScaI AGTACT 1 cut(s) 934
ScrFI CCNGG 3 cut(s) 245, 265, 285
SduI GDGCHC 2 cut(s) 30, 84
SfaNI GCATC 4 cut(s) 23, 422, 469, 487
SfoI GGCGCC 1 cut(s) 269
SinI GGWCC 4 cut(s) 785, 832, 857, 1073
SmiMI CAYNNNNRTG 2 cut(s) 44, 495
SmlI CTYRAG 2 cut(s) 683, 1181
SmoI CTYRAG 2 cut(s) 683, 1181
SsiI CCGC 9 cut(s) 218, 232, 240, 255, 280, 288, 292, 307, 528
SspDI GGCGCC 1 cut(s) 267
SspI AATATT 1 cut(s) 1164
SspMI CTAG 7 cut(s) 272, 369, 768, 1019, 1091, 1109, 1118
SstI GAGCTC 2 cut(s) 30, 84
StyD4I CCNGG 3 cut(s) 243, 263, 283
StyI CCWWGG 3 cut(s) 75, 743, 828
TaaI ACNGT 2 cut(s) 43, 713
TaqI TCGA 6 cut(s) 106, 110, 335, 404, 570, 759
TatI WGTACW 2 cut(s) 120, 932
TauI GCSGC 4 cut(s) 234, 258, 291, 294
TfiI GAWTC 2 cut(s) 53, 869
Tru1I TTAA 4 cut(s) 324, 471, 852, 995
Tru9I TTAA 4 cut(s) 324, 471, 852, 995
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 1 cut(s) 1190
TseI GCWGC 3 cut(s) 546, 549, 552
Tsp45I GTSAC 1 cut(s) 1190
TspDTI ATGAA 6 cut(s) 45, 479, 504, 594, 659, 861
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 4 cut(s) 785, 832, 857, 1073
XapI RAATTY 3 cut(s) 717, 736, 1201
XbaI TCTAGA 1 cut(s) 1117
XcmI CCANNNNNNNNNTGG 2 cut(s) 271, 1083
XspI CTAG 7 cut(s) 272, 369, 768, 1019, 1091, 1109, 1118
ZrmI AGTACT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.