Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Reverse (-)

56161615 .. 56170741

Gene Structure 9127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAGTCTCGTTGCAGGTCTGCAATTCCAGCTCGGCTATTTTCGACTTGGTGATGCGGTGATTAGGTCTAAAGGGTCCGTTCGGTTTGCCGAGGATGTTCTTTTACTTCGAAGGGCGGAAAATACTCAAAAGATGATGCAAAGACCGTTGCATTTTGTCATCTGCAGGGTGTGGTGCACTCGTTGCATTTTCACCGAGGGAATGAACAATGAACTCGAGTCAAGTCATAGAGAACACTCGAGGAGCCGTGAGCTTGCGATGCCGAGCTTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCGAGGATGGTCGCGCTTCCAAATAGTGGAGCAAGCGCATGTGCGAGAGGCTTTGGTTGTTGGCAGACAAATTACTTTATTGAAGTTATGATGGATTGCTACTATCAACCTTGTTCCTCCATTGCCATGTTCATCGGCCAATTTATTTGTGAAGATTCTTCATTTACCACTAACCTTTCCTTCACTCGCTGGAAAGAGCTAATCTTGTCGTCGGTCGGAATTCTCCTCCAAGGAGGCTCCTCACATCCCAGAAATTTTGGTTCCGATCCTATCTCCGATTTCAAGCTTTTGTCTGAAAGGCCTCGATGGACAGATATCATGGCTGATCAGCTGTTTGACATGGGTGTGCCAGGAGATGAGCACCTGGATATCATCGAAAAAATATTTGTGGTGGCTGAAGATGCTGTCTCTGGGCTGCCTATTCTTGCAGGAATAAGGGACGTTCTTGATCATATAGTGGACAGTAGCAGTGATACTGGTGAAACAATGAGAGCGGCACGCTCGACAGCATATACAAACGAGAATATATTAATTCCAGCGACGAGTTCTTCCGTTGACGGTTTGGTCGTTTGGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2 zf-rbx1

Protein Analysis

307

Amino Acids

34.72

Weight (kDa)

6.1

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	905
Acc36I	ACCTGC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	836
AccII	CGCG	1 cut(s)	356
AciI	CCGC	3 cut(s)	56, 116, 836
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	2 cut(s)	341, 478
AcsI	RAATTY	2 cut(s)	561, 595
AcuI	CTGAAG	1 cut(s)	759
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	286, 425, 625
AjnI	CCWGG	2 cut(s)	691, 705
AluBI	AGCT	7 cut(s)	31, 253, 267, 276, 541, 628, 673
AluI	AGCT	7 cut(s)	31, 253, 267, 276, 541, 628, 673
Alw21I	GWGCWC	2 cut(s)	179, 705
Alw26I	GTCTC	2 cut(s)	11, 754
Alw44I	GTGCAC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	2 cut(s)	215, 238
AoxI	GGCC	3 cut(s)	341, 478, 641
ApaLI	GTGCAC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	757
ApoI	RAATTY	2 cut(s)	561, 595
AseI	ATTAAT	1 cut(s)	872
AspLEI	GCGC	2 cut(s)	358, 380
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	5 cut(s)	62, 70, 184, 346, 833
AsuII	TTCGAA	1 cut(s)	109
AvaI	CYCGRG	2 cut(s)	215, 238
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	179, 705
BbvI	GCAGC	1 cut(s)	744
BccI	CCATC	3 cut(s)	343, 427, 642
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	2 cut(s)	693, 707
BclI	TGATCA	2 cut(s)	667, 790
BcoDI	GTCTC	2 cut(s)	11, 754
BfmI	CTRYAG	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	2 cut(s)	758, 837
BlsI	GCNGC	2 cut(s)	759, 838
Bme1390I	CCNGG	2 cut(s)	693, 707
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	2 cut(s)	215, 238
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	4 cut(s)	76, 245, 580, 604
BmrFI	CCNGG	2 cut(s)	693, 707
BmsI	GCATC	5 cut(s)	43, 126, 249, 303, 733
Bpu14I	TTCGAA	1 cut(s)	109
BsaJI	CCNNGG	5 cut(s)	90, 195, 330, 344, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	823
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	693, 707
BseDI	CCNNGG	5 cut(s)	90, 195, 330, 344, 571
BseGI	GGATG	4 cut(s)	100, 318, 354, 586
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	823
BseRI	GAGGAG	3 cut(s)	256, 557, 571
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	343, 480, 643
BsiEI	CGRYCG	1 cut(s)	558
BsiHKAI	GWGCWC	2 cut(s)	179, 705
BsiHKCI	CYCGRG	2 cut(s)	215, 238
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	11, 754
BsmFI	GGGAC	1 cut(s)	794
BsnI	GGCC	3 cut(s)	343, 480, 643
BsoBI	CYCGRG	2 cut(s)	215, 238
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	179, 705
Bsp143I	GATC	3 cut(s)	607, 667, 790
BspACI	CCGC	3 cut(s)	56, 116, 836
BspANI	GGCC	3 cut(s)	343, 480, 643
BspFNI	CGCG	1 cut(s)	356
BspLI	GGNNCC	4 cut(s)	76, 245, 580, 604
BspMAI	CTGCAG	1 cut(s)	167
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	1 cut(s)	602
BspT104I	TTCGAA	1 cut(s)	109
BsrBI	CCGCTC	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	823
BssECI	CCNNGG	5 cut(s)	90, 195, 330, 344, 571
BssMI	GATC	3 cut(s)	607, 667, 790
BssT1I	CCWWGG	2 cut(s)	330, 571
Bst2UI	CCWGG	2 cut(s)	693, 707
Bst4CI	ACNGT	3 cut(s)	147, 806, 902
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	109
BstC8I	GCNNGC	4 cut(s)	255, 269, 376, 841
BstF5I	GGATG	4 cut(s)	100, 318, 354, 586
BstFNI	CGCG	1 cut(s)	356
BstHHI	GCGC	2 cut(s)	358, 380
BstKTI	GATC	3 cut(s)	610, 670, 793
BstMAI	GTCTC	2 cut(s)	11, 754
BstMBI	GATC	3 cut(s)	607, 667, 790
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 183, 259, 268, 273, 743
BstNI	CCWGG	2 cut(s)	693, 707
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	691, 705
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	179
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	744
BsuRI	GGCC	3 cut(s)	343, 480, 643
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	4 cut(s)	100, 318, 354, 586
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	1 cut(s)	817
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	4 cut(s)	255, 269, 376, 841
CfoI	GCGC	2 cut(s)	358, 380
Cfr13I	GGNCC	1 cut(s)	75
CviAII	CATG	4 cut(s)	381, 469, 661, 682
DpnI	GATC	3 cut(s)	609, 669, 792
DpnII	GATC	3 cut(s)	607, 667, 790
DrdI	GACNNNNNNGTC	1 cut(s)	905
DseDI	GACNNNNNNGTC	1 cut(s)	905
EaeI	YGGCCR	2 cut(s)	341, 478
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	330, 571
Eco147I	AGGCCT	1 cut(s)	643
Eco32I	GATATC	2 cut(s)	658, 712
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	759
Eco88I	CYCGRG	2 cut(s)	215, 238
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	691, 705
EcoRV	GATATC	2 cut(s)	658, 712
EcoT14I	CCWWGG	2 cut(s)	330, 571
ErhI	CCWWGG	2 cut(s)	330, 571
FaeI	CATG	4 cut(s)	384, 472, 664, 685
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	4 cut(s)	380, 468, 660, 681
FbaI	TGATCA	2 cut(s)	667, 790
Fnu4HI	GCNGC	2 cut(s)	758, 837
FokI	GGATG	4 cut(s)	107, 325, 361, 573
Fsp4HI	GCNGC	2 cut(s)	758, 837
GlaI	GCGC	2 cut(s)	357, 379
GluI	GCNGC	2 cut(s)	758, 837
HaeIII	GGCC	3 cut(s)	343, 480, 643
HhaI	GCGC	2 cut(s)	358, 380
Hin1II	CATG	4 cut(s)	384, 472, 664, 685
Hin6I	GCGC	2 cut(s)	356, 378
HinP1I	GCGC	2 cut(s)	356, 378
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	3 cut(s)	4, 218, 497
HphI	GGTGA	5 cut(s)	62, 70, 184, 346, 833
Hpy166II	GTNNAC	3 cut(s)	177, 802, 898
Hpy188I	TCNGA	4 cut(s)	560, 607, 619, 637
Hpy188III	TCNNGA	1 cut(s)	788
Hpy8I	GTNNAC	3 cut(s)	177, 802, 898
Hpy99I	CGWCG	2 cut(s)	556, 886
HpyAV	CCTTC	3 cut(s)	105, 295, 532
HpyCH4III	ACNGT	3 cut(s)	147, 806, 902
HpyCH4IV	ACGT	1 cut(s)	783
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 183, 259, 268, 273, 743
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	4 cut(s)	384, 472, 664, 685
HspAI	GCGC	2 cut(s)	356, 378
Ksp22I	TGATCA	2 cut(s)	667, 790
Kzo9I	GATC	3 cut(s)	607, 667, 790
LmnI	GCTCC	3 cut(s)	243, 371, 584
Lsp1109I	GCAGC	1 cut(s)	744
LweI	GCATC	5 cut(s)	43, 126, 249, 303, 733
MaeII	ACGT	1 cut(s)	783
MalI	GATC	3 cut(s)	609, 669, 792
MbiI	CCGCTC	1 cut(s)	836
MboI	GATC	3 cut(s)	607, 667, 790
MboII	GAAGA	4 cut(s)	492, 506, 752, 882
MhlI	GDGCHC	2 cut(s)	179, 705
MluCI	AATT	6 cut(s)	23, 412, 482, 561, 595, 873
MlyI	GAGTC	2 cut(s)	13, 227
MmeI	TCCRAC	1 cut(s)	538
MseI	TTAA	2 cut(s)	323, 872
MslI	CAYNNNNRTG	2 cut(s)	467, 686
MspA1I	CMGCKG	1 cut(s)	673
MspR9I	CCNGG	2 cut(s)	693, 707
MvaI	CCWGG	2 cut(s)	693, 707
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	6 cut(s)	28, 183, 259, 268, 273, 743
NdeII	GATC	3 cut(s)	607, 667, 790
NlaIII	CATG	4 cut(s)	384, 472, 664, 685
NlaIV	GGNNCC	4 cut(s)	76, 245, 580, 604
NmeAIII	GCCGAG	4 cut(s)	12, 115, 288, 369
NspI	RCATGY	1 cut(s)	384
NspV	TTCGAA	1 cut(s)	109
PaeR7I	CTCGAG	2 cut(s)	215, 238
PceI	AGGCCT	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	1 cut(s)	906
PfeI	GAWTC	1 cut(s)	497
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	759, 838
PleI	GAGTC	2 cut(s)	12, 226
PpsI	GAGTC	2 cut(s)	12, 226
PshBI	ATTAAT	1 cut(s)	872
Psp6I	CCWGG	2 cut(s)	691, 705
PspGI	CCWGG	2 cut(s)	691, 705
PspN4I	GGNNCC	4 cut(s)	76, 245, 580, 604
PspPI	GGNCC	1 cut(s)	75
PspXI	VCTCGAGB	2 cut(s)	215, 238
PstI	CTGCAG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	673
RseI	CAYNNNNRTG	2 cut(s)	467, 686
SaqAI	TTAA	2 cut(s)	323, 872
SatI	GCNGC	2 cut(s)	758, 837
Sau3AI	GATC	3 cut(s)	607, 667, 790
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	13, 227
ScrFI	CCNGG	2 cut(s)	693, 707
SduI	GDGCHC	2 cut(s)	179, 705
SfaNI	GCATC	5 cut(s)	43, 126, 249, 303, 733
SfcI	CTRYAG	1 cut(s)	163
Sfr274I	CTCGAG	2 cut(s)	215, 238
SfuI	TTCGAA	1 cut(s)	109
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	2 cut(s)	215, 238
SmiMI	CAYNNNNRTG	2 cut(s)	467, 686
SmlI	CTYRAG	2 cut(s)	215, 238
SmoI	CTYRAG	2 cut(s)	215, 238
Sse9I	AATT	6 cut(s)	23, 412, 482, 561, 595, 873
SseBI	AGGCCT	1 cut(s)	643
SsiI	CCGC	3 cut(s)	56, 116, 836
SspI	AATATT	1 cut(s)	726
StuI	AGGCCT	1 cut(s)	643
StyD4I	CCNGG	2 cut(s)	691, 705
StyI	CCWWGG	2 cut(s)	330, 571
TaaI	ACNGT	3 cut(s)	147, 806, 902
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	7 cut(s)	43, 109, 216, 239, 646, 717, 845
TaqII	GACCGA	1 cut(s)	544
TasI	AATT	6 cut(s)	23, 412, 482, 561, 595, 873
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	2 cut(s)	323, 872
Tru9I	TTAA	2 cut(s)	323, 872
TscAI	CASTG	1 cut(s)	817
TseI	GCWGC	1 cut(s)	757
TspDTI	ATGAA	4 cut(s)	218, 225, 463, 492
TspGWI	ACGGA	2 cut(s)	67, 883
TspRI	CASTG	1 cut(s)	817
Van91I	CCANNNNNTGG	1 cut(s)	368
VneI	GTGCAC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	872
XapI	RAATTY	2 cut(s)	561, 595
XceI	RCATGY	1 cut(s)	384
XhoI	CTCGAG	2 cut(s)	215, 238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.