Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0047181 |
| rosa_multiflora | Rmu_ssc0000342.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830 |
| rosa_samantha | Rh6BG198300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 59 |
| AcoI | YGGCCR | 1 cut(s) | 145 |
| AfaI | GTAC | 1 cut(s) | 97 |
| AfeI | AGCGCT | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 59, 189 |
| AgsI | TTSAA | 1 cut(s) | 171 |
| AluBI | AGCT | 1 cut(s) | 142 |
| AluI | AGCT | 1 cut(s) | 142 |
| Aor51HI | AGCGCT | 1 cut(s) | 70 |
| AoxI | GGCC | 1 cut(s) | 145 |
| ApeKI | GCWGC | 2 cut(s) | 136, 139 |
| AspLEI | GCGC | 1 cut(s) | 71 |
| AsuHPI | GGTGA | 2 cut(s) | 38, 217 |
| BbvI | GCAGC | 2 cut(s) | 123, 151 |
| BccI | CCATC | 1 cut(s) | 35 |
| BfmI | CTRYAG | 1 cut(s) | 137 |
| BfoI | RGCGCY | 1 cut(s) | 72 |
| BisI | GCNGC | 2 cut(s) | 137, 140 |
| BlsI | GCNGC | 2 cut(s) | 138, 141 |
| BsaJI | CCNNGG | 1 cut(s) | 22 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 59, 189 |
| BseDI | CCNNGG | 1 cut(s) | 22 |
| BseGI | GGATG | 3 cut(s) | 10, 46, 186 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 59, 189 |
| BseX3I | CGGCCG | 1 cut(s) | 145 |
| BseXI | GCAGC | 2 cut(s) | 123, 151 |
| BsgI | GTGCAG | 1 cut(s) | 96 |
| Bsh1285I | CGRYCG | 1 cut(s) | 148 |
| BshFI | GGCC | 1 cut(s) | 147 |
| BsiEI | CGRYCG | 1 cut(s) | 148 |
| BsiSI | CCGG | 2 cut(s) | 148, 190 |
| BslFI | GGGAC | 1 cut(s) | 99 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 59, 189 |
| BsmFI | GGGAC | 1 cut(s) | 99 |
| BsnI | GGCC | 1 cut(s) | 147 |
| Bsp143I | GATC | 1 cut(s) | 225 |
| BspANI | GGCC | 1 cut(s) | 147 |
| BspMAI | CTGCAG | 1 cut(s) | 141 |
| BssECI | CCNNGG | 1 cut(s) | 22 |
| BssMI | GATC | 1 cut(s) | 225 |
| BssT1I | CCWWGG | 1 cut(s) | 22 |
| BstC8I | GCNNGC | 1 cut(s) | 67 |
| BstF5I | GGATG | 3 cut(s) | 10, 46, 186 |
| BstH2I | RGCGCY | 1 cut(s) | 72 |
| BstHHI | GCGC | 1 cut(s) | 71 |
| BstKTI | GATC | 1 cut(s) | 228 |
| BstMBI | GATC | 1 cut(s) | 225 |
| BstMCI | CGRYCG | 1 cut(s) | 148 |
| BstSFI | CTRYAG | 1 cut(s) | 137 |
| BstV1I | GCAGC | 2 cut(s) | 123, 151 |
| BstZI | CGGCCG | 1 cut(s) | 145 |
| BsuRI | GGCC | 1 cut(s) | 147 |
| BtsCI | GGATG | 3 cut(s) | 10, 46, 186 |
| Cac8I | GCNNGC | 1 cut(s) | 67 |
| CfoI | GCGC | 1 cut(s) | 71 |
| Csp6I | GTAC | 1 cut(s) | 96 |
| CviJI | RGCY | 5 cut(s) | 142, 147, 157, 216, 248 |
| CviKI_1 | RGCY | 5 cut(s) | 142, 147, 157, 216, 248 |
| CviQI | GTAC | 1 cut(s) | 96 |
| DpnI | GATC | 1 cut(s) | 227 |
| DpnII | GATC | 1 cut(s) | 225 |
| EaeI | YGGCCR | 1 cut(s) | 145 |
| EagI | CGGCCG | 1 cut(s) | 145 |
| EclXI | CGGCCG | 1 cut(s) | 145 |
| Eco130I | CCWWGG | 1 cut(s) | 22 |
| Eco47III | AGCGCT | 1 cut(s) | 70 |
| Eco52I | CGGCCG | 1 cut(s) | 145 |
| EcoT14I | CCWWGG | 1 cut(s) | 22 |
| ErhI | CCWWGG | 1 cut(s) | 22 |
| FaqI | GGGAC | 1 cut(s) | 99 |
| Fnu4HI | GCNGC | 2 cut(s) | 137, 140 |
| FokI | GGATG | 3 cut(s) | 17, 53, 173 |
| Fsp4HI | GCNGC | 2 cut(s) | 137, 140 |
| GlaI | GCGC | 1 cut(s) | 70 |
| GluI | GCNGC | 2 cut(s) | 137, 140 |
| HaeII | RGCGCY | 1 cut(s) | 72 |
| HaeIII | GGCC | 1 cut(s) | 147 |
| HapII | CCGG | 2 cut(s) | 148, 190 |
| HhaI | GCGC | 1 cut(s) | 71 |
| Hin6I | GCGC | 1 cut(s) | 69 |
| HinP1I | GCGC | 1 cut(s) | 69 |
| HinfI | GANTC | 1 cut(s) | 151 |
| HpaII | CCGG | 2 cut(s) | 148, 190 |
| HphI | GGTGA | 2 cut(s) | 38, 217 |
| Hpy188I | TCNGA | 1 cut(s) | 120 |
| HpyCH4V | TGCA | 3 cut(s) | 8, 77, 139 |
| HspAI | GCGC | 1 cut(s) | 69 |
| Kzo9I | GATC | 1 cut(s) | 225 |
| LmnI | GCTCC | 1 cut(s) | 62 |
| LpnPI | CCDG | 4 cut(s) | 161, 203, 231, 236 |
| Lsp1109I | GCAGC | 2 cut(s) | 123, 151 |
| MalI | GATC | 1 cut(s) | 227 |
| MboI | GATC | 1 cut(s) | 225 |
| MboII | GAAGA | 2 cut(s) | 156, 159 |
| MnlI | CCTC | 4 cut(s) | 31, 73, 194, 196 |
| MseI | TTAA | 1 cut(s) | 15 |
| MspI | CCGG | 2 cut(s) | 148, 190 |
| NdeII | GATC | 1 cut(s) | 225 |
| NmeAIII | GCCGAG | 1 cut(s) | 123 |
| PfeI | GAWTC | 1 cut(s) | 151 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 59 |
| PkrI | GCNGC | 2 cut(s) | 138, 141 |
| PstI | CTGCAG | 1 cut(s) | 141 |
| RsaI | GTAC | 1 cut(s) | 97 |
| RsaNI | GTAC | 1 cut(s) | 96 |
| SaqAI | TTAA | 1 cut(s) | 15 |
| SatI | GCNGC | 2 cut(s) | 137, 140 |
| Sau3AI | GATC | 1 cut(s) | 225 |
| SetI | ASST | 3 cut(s) | 144, 199, 207 |
| SfcI | CTRYAG | 1 cut(s) | 137 |
| SgeI | CNNG | 9 cut(s) | 35, 49, 78, 84, 155, 160, 202, 230, 235 |
| StyI | CCWWGG | 1 cut(s) | 22 |
| TfiI | GAWTC | 1 cut(s) | 151 |
| Tru1I | TTAA | 1 cut(s) | 15 |
| Tru9I | TTAA | 1 cut(s) | 15 |
| TseI | GCWGC | 2 cut(s) | 136, 139 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 59 |