Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Forward (+)

22829172 .. 22835250

Gene Structure 6079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGGCGAGGATGGTCTGCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGAGGGAACTGCAATTCAATCCATTAGGAAGTCTTCGATCGTCAAGGCCGCCACCAACGATCTCGGGAAGCTGGTCGTCACTTTCGCCGGCAATCGTGCTTCGCAAACAAAATTCTTGGTAGAGAACGGACTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

71

Amino Acids

7.31

Weight (kDa)

5.1

Isoelectric Point (pI)

24.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AciI	CCGC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	140
Aor51HI	AGCGCT	1 cut(s)	70
AoxI	GGCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	102
BccI	CCATC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	2 cut(s)	10, 46
BseLI	CCNNNNNNNGG	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	59
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	114, 136
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	2 cut(s)	114, 136
BssT1I	CCWWGG	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	67, 166
BstF5I	GGATG	2 cut(s)	10, 46
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	117, 139
BstMBI	GATC	2 cut(s)	114, 136
BstMCI	CGRYCG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	10, 46
Cac8I	GCNNGC	2 cut(s)	67, 166
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	164
CviJI	RGCY	2 cut(s)	125, 148
CviKI_1	RGCY	2 cut(s)	125, 148
DpnI	GATC	2 cut(s)	116, 138
DpnII	GATC	2 cut(s)	114, 136
Eco130I	CCWWGG	1 cut(s)	22
Eco47III	AGCGCT	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	17, 53
Fsp4HI	GCNGC	1 cut(s)	126
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	8, 77, 89, 211
HspAI	GCGC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	164
KroNI	GCCGGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	114, 136
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	2 cut(s)	134, 178
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	2 cut(s)	116, 138
MboI	GATC	2 cut(s)	114, 136
MboII	GAAGA	1 cut(s)	102
MluCI	AATT	2 cut(s)	90, 188
MnlI	CCTC	2 cut(s)	31, 73
MroNI	GCCGGC	1 cut(s)	164
MseI	TTAA	1 cut(s)	15
MspI	CCGG	1 cut(s)	165
NaeI	GCCGGC	1 cut(s)	166
NdeII	GATC	2 cut(s)	114, 136
NgoMIV	GCCGGC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	154
PdiI	GCCGGC	1 cut(s)	166
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	127
Ple19I	CGATCG	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	213
PvuI	CGATCG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	114, 136
SetI	ASST	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	90, 188
SsiI	CCGC	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	22
TaqI	TCGA	1 cut(s)	113
TasI	AATT	2 cut(s)	90, 188
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.