Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Forward (+)

22822495 .. 22828787

Gene Structure 6293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGGCGAGGATGGTCTGCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGAGGGAACTGCAATTCAATCCATTAGGAAGTCTTCGATCGTCAAGGCCGCCACCAACGATCTCGTGGAAGCTGGTCGTCACTTTCGCCGGCAATCGTGCTTCGCAAACAAAATTCTTGGTAGAGAACGGACTGCAGTAAACAGAGGTTTACAGTTAAGGAAGATGGCAGTGACGATCCACCACCGAGGAGGAAGAGAAGAGAAGGAAGATGACGAACAGTTCGGTTGCAATTCCCGCTTCAATTCAATTCTGCAGTTCCAGCAATTCAGTTCTGCAGTTCCAGCTTTAATTCAATTCTGCAGTTCCAGCAATTCGTTCTGCAGTTCCAGCTTTAATTCAGTTCTCGCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

143

Amino Acids

15.56

Weight (kDa)

8.36

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AciI	CCGC	2 cut(s)	126, 313
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	189
AfeI	AGCGCT	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	4 cut(s)	95, 319, 324, 371
AluBI	AGCT	3 cut(s)	149, 362, 408
AluI	AGCT	3 cut(s)	149, 362, 408
AlwI	GGATC	1 cut(s)	247
Aor51HI	AGCGCT	1 cut(s)	70
AoxI	GGCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	189
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspLEI	GCGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	38
BauI	CACGAG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	102
BccI	CCATC	2 cut(s)	35, 235
BfmI	CTRYAG	5 cut(s)	210, 329, 351, 376, 397
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	22, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	22, 262
BseGI	GGATG	2 cut(s)	10, 46
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	59
BsnI	GGCC	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	114, 136, 252
BspACI	CCGC	2 cut(s)	126, 313
BspANI	GGCC	1 cut(s)	125
BspMAI	CTGCAG	5 cut(s)	214, 333, 355, 380, 401
BspPI	GGATC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	22, 262
BssMI	GATC	3 cut(s)	114, 136, 252
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	231, 297
Bst6I	CTCTTC	2 cut(s)	265, 270
BstC8I	GCNNGC	2 cut(s)	67, 167
BstF5I	GGATG	2 cut(s)	10, 46
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	3 cut(s)	117, 139, 255
BstMBI	GATC	3 cut(s)	114, 136, 252
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	5 cut(s)	312, 337, 359, 384, 405
BstSFI	CTRYAG	5 cut(s)	210, 329, 351, 376, 397
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	125
BtsCI	GGATG	2 cut(s)	10, 46
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	67, 167
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	165
CviJI	RGCY	4 cut(s)	125, 149, 362, 408
CviKI_1	RGCY	4 cut(s)	125, 149, 362, 408
DpnI	GATC	3 cut(s)	116, 138, 254
DpnII	GATC	3 cut(s)	114, 136, 252
Eam1104I	CTCTTC	2 cut(s)	265, 270
EarI	CTCTTC	2 cut(s)	265, 270
Eco130I	CCWWGG	1 cut(s)	22
Eco47III	AGCGCT	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	17, 53
Fsp4HI	GCNGC	1 cut(s)	126
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	166
HhaI	GCGC	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	217, 227
Hpy8I	GTNNAC	2 cut(s)	217, 227
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	231, 297
HpyCH4V	TGCA	9 cut(s)	8, 77, 89, 212, 306, 331, 353, 378, 399
HpyF10VI	GCNNNNNNNGC	5 cut(s)	312, 337, 359, 384, 405
HspAI	GCGC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	114, 136, 252
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	6 cut(s)	135, 179, 350, 372, 397, 418
MaeIII	GTNAC	2 cut(s)	155, 247
MalI	GATC	3 cut(s)	116, 138, 254
MboI	GATC	3 cut(s)	114, 136, 252
MboII	GAAGA	5 cut(s)	102, 250, 282, 287, 296
MnlI	CCTC	5 cut(s)	31, 73, 215, 257, 260
MroNI	GCCGGC	1 cut(s)	165
MseI	TTAA	5 cut(s)	15, 233, 365, 411, 430
MspI	CCGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	5 cut(s)	312, 337, 359, 384, 405
NaeI	GCCGGC	1 cut(s)	167
NdeII	GATC	3 cut(s)	114, 136, 252
NgoMIV	GCCGGC	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	155, 247
PdiI	GCCGGC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	127
Ple19I	CGATCG	1 cut(s)	117
PstI	CTGCAG	5 cut(s)	214, 333, 355, 380, 401
PvuI	CGATCG	1 cut(s)	117
SaqAI	TTAA	5 cut(s)	15, 233, 365, 411, 430
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	114, 136, 252
SetI	ASST	4 cut(s)	151, 226, 364, 410
SfcI	CTRYAG	5 cut(s)	210, 329, 351, 376, 397
SsiI	CCGC	2 cut(s)	126, 313
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	231, 297
TaqI	TCGA	1 cut(s)	113
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	5 cut(s)	15, 233, 365, 411, 430
Tru9I	TTAA	5 cut(s)	15, 233, 365, 411, 430
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	2 cut(s)	155, 247
Tsp45I	GTSAC	2 cut(s)	155, 247
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	252
Van91I	CCANNNNNTGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.