Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Forward (+)

22815435 .. 22816586

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGGTGACGATCCACCAGTCGAGGAGGAAGAGAAGGAAGATGACGAACGATTCGGTTGCAATTCCAGCTTCAATTCAATTCGCAGTTCCAGCAATTCAGTTCTGCAGTTCCAGCTTTAATTCAATTCTGCAGTTCCAGCAATTCAGTTCTGCAGTTCCAGCTTTAATTCAGTTCTGCAGTTCCGCTTTAATTCAATTCTGCAGTTCCAGCTTTAATTCAATTCGCAGTTCCAGCAATTCGATTCGCAGTTCCGGCTTCAGTTCGCAATTCTGCAGTTCAGTTCTGCAATTCCAGCTCGGCTATTTTCGACTTGGTGATGCAGTGATTAGGTCTAAAAGGGTGTGGTGCACTTGTTGCATTTTCACCGAGGGAATGAACAATGAACCGAGTCAAGTCATAGAGAACACTCGAGGAGCCGTGAGCTTACGGATGCCGAGATTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGGCGAGGATGGTCTGCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGAGGGACAATTCCAATGACCTTGTGAGGTCACGGGCGAAGATCCGACCGTTGGATCTTCGTATAATTGCAAATCGAGTTAAGGAAGGTAATTCGAGAGAATCCGACCGTCGGATTTTCATAAAATTTTGTAGGGATGTTTATAAGGAAGATTTAGGAAGATCCGACCGTTGGATCTTCGTGATAATTTTGGAGGATGATCCTAAGGGCGATCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.65

Weight (kDa)

9.92

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
AccB7I	CCANNNNNTGG	1 cut(s)	541
AciI	CCGC	2 cut(s)	5, 186
AclWI	GGATC	7 cut(s)	7, 595, 621, 714, 740, 752, 764
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	1 cut(s)	244
AfeI	AGCGCT	1 cut(s)	552
AfiI	CCNNNNNNNGG	4 cut(s)	541, 610, 669, 729
AgsI	TTSAA	6 cut(s)	75, 80, 126, 197, 222, 460
AluBI	AGCT	7 cut(s)	71, 117, 164, 213, 298, 426, 450
AluI	AGCT	7 cut(s)	71, 117, 164, 213, 298, 426, 450
Alw21I	GWGCWC	1 cut(s)	353
Alw44I	GTGCAC	1 cut(s)	349
AlwI	GGATC	7 cut(s)	7, 595, 621, 714, 740, 752, 764
Ama87I	CYCGRG	1 cut(s)	411
Aor51HI	AGCGCT	1 cut(s)	552
ApaLI	GTGCAC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	683
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
AspLEI	GCGC	1 cut(s)	553
AsuHPI	GGTGA	4 cut(s)	19, 329, 358, 520
AvaI	CYCGRG	1 cut(s)	411
AxyI	CCTNAGG	1 cut(s)	762
BaeGI	GKGCMC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	353
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BfmI	CTRYAG	6 cut(s)	106, 131, 153, 178, 202, 274
BfoI	RGCGCY	1 cut(s)	554
BmeT110I	CYCGRG	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	418
BmsI	GCATC	3 cut(s)	310, 423, 477
BsaJI	CCNNGG	2 cut(s)	369, 504
Bsc4I	CCNNNNNNNGG	4 cut(s)	541, 610, 669, 729
Bse1I	ACTGG	1 cut(s)	19
Bse21I	CCTNAGG	1 cut(s)	762
BseDI	CCNNGG	2 cut(s)	369, 504
BseGI	GGATG	5 cut(s)	438, 492, 528, 700, 760
BseLI	CCNNNNNNNGG	4 cut(s)	541, 610, 669, 729
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	2 cut(s)	40, 429
BseSI	GKGCMC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	578
Bsh1285I	CGRYCG	3 cut(s)	608, 667, 727
BsiEI	CGRYCG	3 cut(s)	608, 667, 727
BsiHKAI	GWGCWC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	4 cut(s)	541, 610, 669, 729
BsmFI	GGGAC	1 cut(s)	578
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	7 cut(s)	12, 600, 613, 719, 732, 757, 769
BspACI	CCGC	2 cut(s)	5, 186
BspLI	GGNNCC	1 cut(s)	418
BspMAI	CTGCAG	6 cut(s)	110, 135, 157, 182, 206, 278
BspPI	GGATC	7 cut(s)	7, 595, 621, 714, 740, 752, 764
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	369, 504
BssMI	GATC	7 cut(s)	12, 600, 613, 719, 732, 757, 769
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	609, 668, 728
Bst6I	CTCTTC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	1 cut(s)	762
BstF5I	GGATG	5 cut(s)	438, 492, 528, 700, 760
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	7 cut(s)	15, 603, 616, 722, 735, 760, 772
BstMBI	GATC	7 cut(s)	12, 600, 613, 719, 732, 757, 769
BstMCI	CGRYCG	3 cut(s)	608, 667, 727
BstSFI	CTRYAG	6 cut(s)	106, 131, 153, 178, 202, 274
BstSLI	GKGCMC	1 cut(s)	353
BstX2I	RGATCY	4 cut(s)	600, 613, 719, 732
BstYI	RGATCY	4 cut(s)	600, 613, 719, 732
Bsu36I	CCTNAGG	1 cut(s)	762
BtsCI	GGATG	5 cut(s)	438, 492, 528, 700, 760
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	549
CfoI	GCGC	1 cut(s)	553
DdeI	CTNAG	1 cut(s)	762
DpnI	GATC	7 cut(s)	14, 602, 615, 721, 734, 759, 771
DpnII	GATC	7 cut(s)	12, 600, 613, 719, 732, 757, 769
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	504
Eco47III	AGCGCT	1 cut(s)	552
Eco57I	CTGAAG	1 cut(s)	244
Eco81I	CCTNAGG	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaiI	YATR	6 cut(s)	401, 470, 484, 623, 680, 702
FaqI	GGGAC	1 cut(s)	578
FokI	GGATG	5 cut(s)	445, 499, 535, 707, 767
GlaI	GCGC	1 cut(s)	552
HaeII	RGCGCY	1 cut(s)	554
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	553
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HinfI	GANTC	4 cut(s)	53, 244, 391, 659
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	4 cut(s)	19, 329, 358, 520
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	4 cut(s)	605, 664, 672, 724
Hpy188III	TCNNGA	2 cut(s)	654, 739
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	1 cut(s)	672
HpyAV	CCTTC	3 cut(s)	30, 469, 638
HpyCH4III	ACNGT	3 cut(s)	609, 668, 728
HpyF3I	CTNAG	1 cut(s)	762
HspAI	GCGC	1 cut(s)	551
Kzo9I	GATC	7 cut(s)	12, 600, 613, 719, 732, 757, 769
LmnI	GCTCC	2 cut(s)	416, 544
LweI	GCATC	3 cut(s)	310, 423, 477
MaeIII	GTNAC	2 cut(s)	7, 588
MalI	GATC	7 cut(s)	14, 602, 615, 721, 734, 759, 771
MboI	GATC	7 cut(s)	12, 600, 613, 719, 732, 757, 769
MboII	GAAGA	7 cut(s)	43, 52, 608, 610, 719, 727, 729
MflI	RGATCY	4 cut(s)	600, 613, 719, 732
MhlI	GDGCHC	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	6 cut(s)	591, 628, 650, 687, 710, 747
MnlI	CCTC	8 cut(s)	18, 21, 364, 407, 513, 555, 579, 745
MseI	TTAA	6 cut(s)	120, 167, 191, 216, 497, 639
MspI	CCGG	1 cut(s)	255
NdeII	GATC	7 cut(s)	12, 600, 613, 719, 732, 757, 769
NlaIV	GGNNCC	1 cut(s)	418
NmeAIII	GCCGAG	2 cut(s)	279, 462
NmuCI	GTSAC	2 cut(s)	7, 588
PaeR7I	CTCGAG	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	53, 244, 659
PflMI	CCANNNNNTGG	1 cut(s)	541
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PsiI	TTATAA	1 cut(s)	702
PspN4I	GGNNCC	1 cut(s)	418
PspXI	VCTCGAGB	1 cut(s)	411
PstI	CTGCAG	6 cut(s)	110, 135, 157, 182, 206, 278
PsuI	RGATCY	4 cut(s)	600, 613, 719, 732
SaqAI	TTAA	6 cut(s)	120, 167, 191, 216, 497, 639
Sau3AI	GATC	7 cut(s)	12, 600, 613, 719, 732, 757, 769
SchI	GAGTC	1 cut(s)	400
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	3 cut(s)	310, 423, 477
SfcI	CTRYAG	6 cut(s)	106, 131, 153, 178, 202, 274
Sfr274I	CTCGAG	1 cut(s)	411
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
SsiI	CCGC	2 cut(s)	5, 186
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	609, 668, 728
TaqI	TCGA	6 cut(s)	23, 242, 310, 412, 634, 653
TfiI	GAWTC	3 cut(s)	53, 244, 659
Tru1I	TTAA	6 cut(s)	120, 167, 191, 216, 497, 639
Tru9I	TTAA	6 cut(s)	120, 167, 191, 216, 497, 639
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	2 cut(s)	7, 588
Tsp45I	GTSAC	2 cut(s)	7, 588
TspDTI	ATGAA	3 cut(s)	392, 399, 667
TspGWI	ACGGA	2 cut(s)	445, 762
TspRI	CASTG	1 cut(s)	330
Van91I	CCANNNNNTGG	1 cut(s)	541
VneI	GTGCAC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	683
XhoI	CTCGAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.