Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Reverse (-)

48775690 .. 48783819

Gene Structure 8130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00254530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGAAAAAGGGCTCGAGCTGCAGCCCGACGCCGAAATCGCCCAAAACTTTCTCAACTTGATTTCTCCCTCATCCGGCAACCATTTGAGGTGAAACAAAGTCCAGACCAGTTCGCCTCCTCCCCACGAACAGCCGGTGCCCTCATCTCCTCCCCGTGCGGCGGCTACACGGCGAAATCGAAGCGAGTGGTGGACGTTTTCACGTTGAATGGAGCCGCCGCCGTTTTACGGAAAATTTCTGCCAAACCGTGGCTTCTAGGGATTTGGGAAGGAGTTCTTGGAGAAGGAGGTCACGAAGGCTGCAGAGCCGCCGTCGTCTCGCACACTAACCCCATGAACCCAAGACACCCATTTCTCCGAACGCACTCAACTTCTTCTTCACCAATCGTTCGCTGCAACTTTAGGGCTCGTTGTCCCTTAATGACACTCCGGCCTCCGTCGTTGATTCCAAGAGCGGTGTGTTATTTCCATTGGTCCTGGCCGAGACTCGGCGACTTCGGGAATTGGGTTGAGGAGAAAACGCGTCTTTGGGGTTGTAGAACATCGATTTGTATTCATATGGACGGAAAGGACACCCAGGAAGAACTGCAGAAAAGGAACCTCCAGGAGGAGTTGGATGACCATGAGAGGAGGCATTTTTCATCAAAGGATAAATATAGTTATCCTGCTGCAGAGCATTTTGACTACCATGTGGCTTTAGGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071007 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Cwf_Cwc_15

Protein Analysis

235

Amino Acids

26.67

Weight (kDa)

9.87

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	455
AccII	CGCG	1 cut(s)	523
AciI	CCGC	6 cut(s)	159, 162, 216, 219, 309, 455
AcoI	YGGCCR	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	31
AfiI	CCNNNNNNNGG	6 cut(s)	75, 161, 228, 249, 488, 607
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	3 cut(s)	476, 576, 603
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	322, 478
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	2 cut(s)	431, 479
ApeKI	GCWGC	5 cut(s)	20, 23, 300, 393, 668
ApoI	RAATTY	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	2 cut(s)	103, 372
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	16, 409
BbvI	GCAGC	5 cut(s)	7, 35, 287, 380, 655
BceAI	ACGGC	3 cut(s)	186, 206, 296
BciT130I	CCWGG	3 cut(s)	478, 578, 605
BcoDI	GTCTC	2 cut(s)	322, 478
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	4 cut(s)	21, 301, 587, 669
Bme1390I	CCNGG	3 cut(s)	478, 578, 605
Bme18I	GGWCC	1 cut(s)	474
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	3 cut(s)	139, 214, 599
BmrFI	CCNGG	3 cut(s)	478, 578, 605
BpmI	CTGGAG	1 cut(s)	587
Bsa29I	ATCGAT	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	248, 576
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 161, 228, 249, 488, 607
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	3 cut(s)	478, 578, 605
BseCI	ATCGAT	1 cut(s)	545
BseDI	CCNNGG	2 cut(s)	248, 576
BseGI	GGATG	2 cut(s)	72, 622
BseLI	CCNNNNNNNGG	6 cut(s)	75, 161, 228, 249, 488, 607
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	5 cut(s)	109, 139, 527, 623, 643
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	5 cut(s)	7, 35, 287, 380, 655
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	433, 481
BshNI	GGYRCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	545
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	76, 135, 430
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	6 cut(s)	75, 161, 228, 249, 488, 607
BsmAI	GTCTC	2 cut(s)	322, 478
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	2 cut(s)	433, 481
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	3 cut(s)	16, 142, 409
BspACI	CCGC	6 cut(s)	159, 162, 216, 219, 309, 455
BspANI	GGCC	2 cut(s)	433, 481
BspDI	ATCGAT	1 cut(s)	545
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	139, 214, 599
BspMAI	CTGCAG	4 cut(s)	25, 305, 591, 673
BspT107I	GGYRCC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	248, 576
BssNI	GRCGYC	1 cut(s)	31
Bst2UI	CCWGG	3 cut(s)	478, 578, 605
Bst4CI	ACNGT	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	31
BstDSI	CCRYGG	1 cut(s)	248
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	2 cut(s)	72, 622
BstFNI	CGCG	1 cut(s)	523
BstMAI	GTCTC	2 cut(s)	322, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 39
BstNI	CCWGG	3 cut(s)	478, 578, 605
BstSCI	CCNGG	3 cut(s)	476, 576, 603
BstSFI	CTRYAG	4 cut(s)	21, 301, 587, 669
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	5 cut(s)	7, 35, 287, 380, 655
Bsu15I	ATCGAT	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	433, 481
BsuTUI	ATCGAT	1 cut(s)	545
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	72, 622
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	474
ClaI	ATCGAT	1 cut(s)	545
CseI	GACGC	2 cut(s)	39, 512
CviAII	CATG	3 cut(s)	334, 623, 689
EaeI	YGGCCR	1 cut(s)	479
Eco24I	GRGCYC	2 cut(s)	16, 409
Eco47I	GGWCC	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoRII	CCWGG	3 cut(s)	476, 576, 603
EcoT38I	GRGCYC	2 cut(s)	16, 409
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	3 cut(s)	337, 626, 692
FaiI	YATR	6 cut(s)	335, 558, 560, 624, 657, 690
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	3 cut(s)	333, 622, 688
FauNDI	CATATG	1 cut(s)	558
FokI	GGATG	2 cut(s)	59, 629
FriOI	GRGCYC	2 cut(s)	16, 409
FspBI	CTAG	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	2 cut(s)	433, 481
HapII	CCGG	3 cut(s)	76, 135, 430
HgaI	GACGC	2 cut(s)	39, 512
Hin1I	GRCGYC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	337, 626, 692
HinfI	GANTC	2 cut(s)	445, 486
HpaII	CCGG	3 cut(s)	76, 135, 430
HphI	GGTGA	2 cut(s)	103, 372
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	3 cut(s)	104, 293, 499
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	3 cut(s)	33, 317, 442
HpyAV	CCTTC	3 cut(s)	263, 278, 290
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4IV	ACGT	2 cut(s)	195, 203
HpyCH4V	TGCA	5 cut(s)	23, 303, 396, 589, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 39
HpySE526I	ACGT	2 cut(s)	195, 203
Hsp92I	GRCGYC	1 cut(s)	31
Hsp92II	CATG	3 cut(s)	337, 626, 692
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	5 cut(s)	7, 35, 287, 380, 655
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	195, 203
MaeIII	GTNAC	1 cut(s)	290
MbiI	CCGCTC	1 cut(s)	455
MboII	GAAGA	3 cut(s)	366, 369, 593
MhlI	GDGCHC	3 cut(s)	16, 142, 409
MluCI	AATT	2 cut(s)	234, 502
MluI	ACGCGT	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	594
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	1 cut(s)	419
MspI	CCGG	3 cut(s)	76, 135, 430
MspR9I	CCNGG	3 cut(s)	478, 578, 605
MvaI	CCWGG	3 cut(s)	478, 578, 605
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	2 cut(s)	20, 39
NdeI	CATATG	1 cut(s)	558
NlaIII	CATG	3 cut(s)	337, 626, 692
NlaIV	GGNNCC	3 cut(s)	139, 214, 599
NmeAIII	GCCGAG	2 cut(s)	468, 507
NmuCI	GTSAC	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	249
PfoI	TCCNGGA	1 cut(s)	603
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
Psp6I	CCWGG	3 cut(s)	476, 576, 603
PspGI	CCWGG	3 cut(s)	476, 576, 603
PspN4I	GGNNCC	3 cut(s)	139, 214, 599
PspPI	GGNCC	1 cut(s)	474
PspXI	VCTCGAGB	1 cut(s)	15
PstI	CTGCAG	4 cut(s)	25, 305, 591, 673
SaqAI	TTAA	1 cut(s)	419
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	3 cut(s)	478, 578, 605
SduI	GDGCHC	3 cut(s)	16, 142, 409
SetI	ASST	7 cut(s)	22, 93, 198, 206, 292, 603, 703
SfcI	CTRYAG	4 cut(s)	21, 301, 587, 669
Sfr274I	CTCGAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	234, 502
SsiI	CCGC	6 cut(s)	159, 162, 216, 219, 309, 455
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	3 cut(s)	476, 576, 603
TaaI	ACNGT	1 cut(s)	249
TaiI	ACGT	2 cut(s)	198, 206
TaqI	TCGA	3 cut(s)	16, 179, 545
TasI	AATT	2 cut(s)	234, 502
TauI	GCSGC	5 cut(s)	162, 165, 218, 221, 311
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	5 cut(s)	20, 23, 300, 393, 668
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	350, 545, 630
TspGWI	ACGGA	3 cut(s)	244, 426, 579
Van91I	CCANNNNNTGG	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	474
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	1 cut(s)	234
XhoI	CTCGAG	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.