Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Forward (+)

51860453 .. 51897115

Gene Structure 36663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCGGTCAATCCCGACGTCGCTCGTGATTCTCCTCAATCCAATGTATAAAGACGTGACCCCGCACGCCAAGCTCATCTCGGGTTCAAATATAAATAGGGATCGCCGGAAGATGCGAACATGCTCCTACAAGGAAGTGAGCTATAATGGAGCGTGGAAGGAGATCGGAGCCTTGCGGAAAATTGGGAAAATTCCCGATCTACAAACTATCGATTTTGATTCGAAAGAGAGGTCGAGAGCGAAGAGAGAGAAGAAAATCTGCAGCTCGGCCGGAAATCGGCTGATTTCTTCTTCAATGGATTTCTCCCTCATCCGGCAACCTTTTGAGGTGAAACAAAGCCCAGACCAAATCGCCACTTCCCCACGAACAGCTCGGCTATCACCGAGTCCCGGCTCAACCCTAGATCACCGCCGACGCACCACCACGCACCGCGCCAAGATCGCCTCGCCGAAGCATCGGAAGCCGGGAACTAAAGCATATCAGTCCCACATCGAAAATAATGAAGAGCCGTTCCGAGAGCTTTTGCTTTCAAGGCTAAGAACTGGTCCGACTAGCCTCACCGAATTCCCAAGTTCTGCTTTAGCGATAACATCGAAACTTGCTACACTCCGTCGTACTCAATTTTTGTGGCGTGTTTGCTTCAACTGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.74

Weight (kDa)

10.74

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	432
AciI	CCGC	5 cut(s)	4, 62, 175, 409, 430
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	189, 563
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	3 cut(s)	276, 312, 389
AgsI	TTSAA	4 cut(s)	87, 294, 531, 643
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	5 cut(s)	73, 141, 264, 371, 520
AluI	AGCT	5 cut(s)	73, 141, 264, 371, 520
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	79
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	189, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	2 cut(s)	390, 465
AsuHPI	GGTGA	4 cut(s)	340, 372, 398, 550
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	545
BauI	CACGAG	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	273
BceAI	ACGGC	1 cut(s)	493
BcnI	CCSGG	2 cut(s)	390, 465
BfaI	CTAG	2 cut(s)	401, 552
BfmI	CTRYAG	1 cut(s)	259
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	390, 465
Bme18I	GGWCC	1 cut(s)	545
BmeT110I	CYCGRG	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	390, 465
BmsI	GCATC	2 cut(s)	102, 463
Bpu14I	TTCGAA	1 cut(s)	221
BpuMI	CCSGG	2 cut(s)	390, 465
Bsa29I	ATCGAT	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 312, 389
Bse1I	ACTGG	1 cut(s)	547
BseCI	ATCGAT	1 cut(s)	210
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	276, 312, 389
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	1 cut(s)	23
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	432
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	269
BshVI	ATCGAT	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	5 cut(s)	106, 270, 313, 390, 464
BslFI	GGGAC	2 cut(s)	372, 469
BslI	CCNNNNNNNGG	3 cut(s)	276, 312, 389
BsmFI	GGGAC	2 cut(s)	372, 469
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	100, 162, 196, 403, 438
BspACI	CCGC	5 cut(s)	4, 62, 175, 409, 430
BspANI	GGCC	1 cut(s)	269
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	263
BspPI	GGATC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	498
BspT104I	TTCGAA	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	547
BssMI	GATC	5 cut(s)	100, 162, 196, 403, 438
BssNI	GRCGYC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	236, 498
BstACI	GRCGYC	1 cut(s)	17
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	536
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	5 cut(s)	103, 165, 199, 406, 441
BstMBI	GATC	5 cut(s)	100, 162, 196, 403, 438
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 440, 460, 532, 645
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	388, 463
BstSFI	CTRYAG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	273
BstZI	CGGCCG	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	269
BsuTUI	ATCGAT	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	545
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	615
CspCI	CAANNNNNGTGG	2 cut(s)	608, 643
CviAII	CATG	1 cut(s)	120
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	1 cut(s)	536
DpnI	GATC	5 cut(s)	102, 164, 198, 405, 440
DpnII	GATC	5 cut(s)	100, 162, 196, 403, 438
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	236, 498
EarI	CTCTTC	2 cut(s)	236, 498
EclXI	CGGCCG	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	545
Eco52I	CGGCCG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	563
FaeI	CATG	1 cut(s)	123
FaiI	YATR	5 cut(s)	48, 92, 121, 144, 478
FalI	AAGNNNNNCTT	2 cut(s)	562, 594
FaqI	GGGAC	2 cut(s)	372, 469
FatI	CATG	1 cut(s)	119
FauI	CCCGC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	2 cut(s)	401, 552
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	5 cut(s)	106, 270, 313, 390, 464
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	3 cut(s)	28, 218, 385
HpaII	CCGG	5 cut(s)	106, 270, 313, 390, 464
HphI	GGTGA	4 cut(s)	340, 372, 398, 550
Hpy188I	TCNGA	4 cut(s)	167, 459, 515, 549
Hpy188III	TCNNGA	4 cut(s)	13, 25, 194, 234
Hpy99I	CGWCG	4 cut(s)	19, 22, 417, 615
HpyAV	CCTTC	1 cut(s)	151
HpyCH4IV	ACGT	2 cut(s)	17, 54
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 440, 460, 532, 645
HpyF3I	CTNAG	1 cut(s)	536
HpySE526I	ACGT	2 cut(s)	17, 54
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	123
HspAI	GCGC	1 cut(s)	432
Kzo9I	GATC	5 cut(s)	100, 162, 196, 403, 438
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	3 cut(s)	128, 149, 167
LpnPI	CCDG	7 cut(s)	119, 283, 326, 354, 403, 477, 528
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	2 cut(s)	102, 463
MaeI	CTAG	2 cut(s)	401, 552
MaeII	ACGT	2 cut(s)	17, 54
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	102, 164, 198, 405, 440
MboI	GATC	5 cut(s)	100, 162, 196, 403, 438
MboII	GAAGA	6 cut(s)	121, 253, 262, 279, 282, 515
MluCI	AATT	4 cut(s)	180, 189, 563, 620
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	6 cut(s)	44, 222, 317, 319, 454, 566
MspI	CCGG	5 cut(s)	106, 270, 313, 390, 464
MspR9I	CCNGG	2 cut(s)	390, 465
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	5 cut(s)	70, 440, 460, 532, 645
NciI	CCSGG	2 cut(s)	390, 465
NdeII	GATC	5 cut(s)	100, 162, 196, 403, 438
NlaIII	CATG	1 cut(s)	123
NlaIV	GGNNCC	1 cut(s)	169
NmeAIII	GCCGAG	2 cut(s)	245, 352
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	123
NspV	TTCGAA	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	28, 218
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
SapI	GCTCTTC	1 cut(s)	498
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	5 cut(s)	100, 162, 196, 403, 438
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	390, 465
SfaNI	GCATC	2 cut(s)	102, 463
SfcI	CTRYAG	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	1 cut(s)	545
Sse9I	AATT	4 cut(s)	180, 189, 563, 620
SsiI	CCGC	5 cut(s)	4, 62, 175, 409, 430
SspMI	CTAG	2 cut(s)	401, 552
StyD4I	CCNGG	2 cut(s)	388, 463
TaiI	ACGT	2 cut(s)	20, 57
TaqI	TCGA	5 cut(s)	210, 221, 233, 492, 593
TasI	AATT	4 cut(s)	180, 189, 563, 620
TfiI	GAWTC	2 cut(s)	28, 218
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	516
TspGWI	ACGGA	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	189, 563
XceI	RCATGY	1 cut(s)	123
XspI	CTAG	2 cut(s)	401, 552
ZraI	GACGTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.