Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Reverse (-)

11955120 .. 11975030

Gene Structure 19911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTTGGAAGGTTGTGAAACAGCTTCGAGAGGCAAAGAGGAGAAATCAGCTTTGCTTCGGAGATGGACGCCGATAATGGAATCCCAAGCCATATCGGCTAGGGTTCATCCTTGGTTGATTTTCAGCTCTACAAGGAGATATGAGATAAGGCTGATAACCATCTCCTTCCAACACAATCGATATTCAATCATGGCACGAGAAAAGATCATACATCGGGAGAGAGGGGATGTACTAGTGACCGTAGATGAGTGGAGACACCAAAAGATAAGGGATGTATTGGTGTTTGTAGAGGTGGTTGTGGCTCTAAGAAAGAGGGGATGTATTGGAGGCCTAGGTTGGATTAGCATGGATTTCTCCCTCATCCGGCGAGCTTTTGAGGTGAAACAAAGCCTAGACCAGTTCGCCACTTCCCCACGAACAGCATGGTGCCCTCCTCTCCTCCCCGGGCGGCGGCTACACGGCGGTGGAGCTCGTAATGATGATCATACTACTTATCCTGGTGCAAATCATGAATACAATTCTGGAGTTAGGGATATACAAGGAAGACACTATGGGCATTTGTCTCTAAATGAGTTTCAATCACTTTCTTCAAATCTTGGCTCAATGGACATAGGAACTCAATATAGTGATAACCCTAATCCATTACATTCTCATGAAATTGGATCAAGCTCACAAGGTAGAAGCACATATGGCCTTTTTGATCAGTCTTCATCCCAAATGTCATATGTTTCATACAATGAAAGACCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

28.57

Weight (kDa)

9.19

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	426
AciI	CCGC	3 cut(s)	448, 451, 462
AclWI	GGATC	1 cut(s)	670
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	363, 450
AgsI	TTSAA	3 cut(s)	186, 578, 591
AhlI	ACTAGT	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	496
AleI	CACNNNNGTG	1 cut(s)	462
AluBI	AGCT	6 cut(s)	23, 50, 126, 371, 470, 669
AluI	AGCT	6 cut(s)	23, 50, 126, 371, 470, 669
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	2 cut(s)	247, 567
AlwI	GGATC	1 cut(s)	670
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	328, 691
AspA2I	CCTAGG	1 cut(s)	331
AsuC2I	CCSGG	2 cut(s)	444, 445
AsuHPI	GGTGA	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	431
BanI	GGYRCC	1 cut(s)	426
BanII	GRGCYC	1 cut(s)	472
BauI	CACGAG	1 cut(s)	195
BbsI	GAAGAC	2 cut(s)	550, 699
Bbv12I	GWGCWC	1 cut(s)	472
BccI	CCATC	2 cut(s)	57, 167
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	2 cut(s)	481, 700
BcnI	CCSGG	2 cut(s)	444, 445
BcoDI	GTCTC	2 cut(s)	247, 567
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	4 cut(s)	99, 233, 332, 392
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	449, 452
BlnI	CCTAGG	1 cut(s)	331
BlsI	GCNGC	2 cut(s)	450, 453
Bme1390I	CCNGG	3 cut(s)	444, 445, 498
BmeT110I	CYCGRG	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	3 cut(s)	444, 445, 498
BpiI	GAAGAC	2 cut(s)	550, 699
BpmI	CTGGAG	1 cut(s)	543
BpuMI	CCSGG	2 cut(s)	444, 445
Bsa29I	ATCGAT	1 cut(s)	178
BsaBI	GATNNNNATC	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	4 cut(s)	110, 331, 442, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 450
Bse1I	ACTGG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	178
BseDI	CCNNGG	4 cut(s)	110, 331, 442, 443
BseGI	GGATG	6 cut(s)	106, 232, 277, 323, 360, 710
BseJI	GATNNNNATC	1 cut(s)	158
BseLI	CCNNNNNNNGG	2 cut(s)	363, 450
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	3 cut(s)	53, 423, 428
BseSI	GKGCMC	1 cut(s)	431
BshFI	GGCC	2 cut(s)	330, 693
BshNI	GGYRCC	1 cut(s)	426
BshVI	ATCGAT	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	364, 444
BslI	CCNNNNNNNGG	2 cut(s)	363, 450
BsmAI	GTCTC	2 cut(s)	247, 567
BsnI	GGCC	2 cut(s)	330, 693
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	431, 472
Bsp143I	GATC	4 cut(s)	204, 481, 662, 700
BspACI	CCGC	3 cut(s)	448, 451, 462
BspANI	GGCC	2 cut(s)	330, 693
BspDI	ATCGAT	1 cut(s)	178
BspHI	TCATGA	2 cut(s)	508, 652
BspLI	GGNNCC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	670
BspT107I	GGYRCC	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	4 cut(s)	110, 331, 442, 443
BssMI	GATC	4 cut(s)	204, 481, 662, 700
BssNI	GRCGYC	1 cut(s)	68
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	110, 331
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	241
BstACI	GRCGYC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	6 cut(s)	106, 232, 277, 323, 360, 710
BstKTI	GATC	4 cut(s)	207, 484, 665, 703
BstMAI	GTCTC	2 cut(s)	247, 567
BstMBI	GATC	4 cut(s)	204, 481, 662, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 690
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	3 cut(s)	442, 443, 496
BstSLI	GKGCMC	1 cut(s)	431
BstV2I	GAAGAC	2 cut(s)	550, 699
Bsu15I	ATCGAT	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	330, 693
BsuTUI	ATCGAT	1 cut(s)	178
BtsCI	GGATG	6 cut(s)	106, 232, 277, 323, 360, 710
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	2 cut(s)	508, 652
Cfr9I	CCCGGG	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	178
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	5 cut(s)	190, 346, 423, 509, 653
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	4 cut(s)	206, 483, 664, 702
DpnII	GATC	4 cut(s)	204, 481, 662, 700
Ecl136II	GAGCTC	1 cut(s)	470
Eco130I	CCWWGG	2 cut(s)	110, 331
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	110, 331
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	2 cut(s)	110, 331
FaeI	CATG	5 cut(s)	193, 349, 426, 512, 656
FatI	CATG	5 cut(s)	189, 345, 422, 508, 652
FauNDI	CATATG	2 cut(s)	688, 724
FbaI	TGATCA	2 cut(s)	481, 700
Fnu4HI	GCNGC	2 cut(s)	449, 452
FokI	GGATG	6 cut(s)	93, 239, 284, 330, 347, 697
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	2 cut(s)	449, 452
FspBI	CTAG	4 cut(s)	99, 233, 332, 392
GluI	GCNGC	2 cut(s)	449, 452
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	330, 693
HapII	CCGG	2 cut(s)	364, 444
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	193, 349, 426, 512, 656
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	2 cut(s)	364, 444
HphI	GGTGA	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	5 cut(s)	27, 215, 509, 522, 653
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 690
HpyF3I	CTNAG	1 cut(s)	305
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	5 cut(s)	193, 349, 426, 512, 656
Ksp22I	TGATCA	2 cut(s)	481, 700
Kzo9I	GATC	4 cut(s)	204, 481, 662, 700
LmnI	GCTCC	1 cut(s)	467
LpnPI	CCDG	6 cut(s)	377, 410, 457, 483, 507, 510
MaeI	CTAG	4 cut(s)	99, 233, 332, 392
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	4 cut(s)	206, 483, 664, 702
MboI	GATC	4 cut(s)	204, 481, 662, 700
MboII	GAAGA	3 cut(s)	555, 579, 699
MhlI	GDGCHC	2 cut(s)	431, 472
MluCI	AATT	2 cut(s)	517, 657
MmeI	TCCRAC	2 cut(s)	193, 317
MslI	CAYNNNNRTG	2 cut(s)	462, 651
MspI	CCGG	2 cut(s)	364, 444
MspR9I	CCNGG	3 cut(s)	444, 445, 498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	95, 690
NciI	CCSGG	2 cut(s)	444, 445
NdeI	CATATG	2 cut(s)	688, 724
NdeII	GATC	4 cut(s)	204, 481, 662, 700
NlaIII	CATG	5 cut(s)	193, 349, 426, 512, 656
NlaIV	GGNNCC	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	462
PagI	TCATGA	2 cut(s)	508, 652
PceI	AGGCCT	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	450, 453
Psp124BI	GAGCTC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	428
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
RseI	CAYNNNNRTG	2 cut(s)	462, 651
SacI	GAGCTC	1 cut(s)	472
SatI	GCNGC	2 cut(s)	449, 452
Sau3AI	GATC	4 cut(s)	204, 481, 662, 700
ScrFI	CCNGG	3 cut(s)	444, 445, 498
SduI	GDGCHC	2 cut(s)	431, 472
SmaI	CCCGGG	1 cut(s)	445
SmiMI	CAYNNNNRTG	2 cut(s)	462, 651
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	2 cut(s)	517, 657
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	3 cut(s)	448, 451, 462
SspMI	CTAG	4 cut(s)	99, 233, 332, 392
SstI	GAGCTC	1 cut(s)	472
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	3 cut(s)	442, 443, 496
StyI	CCWWGG	2 cut(s)	110, 331
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	26, 178
TasI	AATT	2 cut(s)	517, 657
TatI	WGTACW	1 cut(s)	229
TauI	GCSGC	2 cut(s)	451, 454
TfiI	GAWTC	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	6 cut(s)	95, 525, 669, 699, 720, 753
TspMI	CCCGGG	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	420
XmaI	CCCGGG	1 cut(s)	443
XmaJI	CCTAGG	1 cut(s)	331
XspI	CTAG	4 cut(s)	99, 233, 332, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.