Rroxscaffold_5G00369650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012694
Physical Location & Seq
Forward (+)
51427792 .. 51449211
21420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369650.1

Sequence Viewer

Length: 474 bp
ATGCATGAAACGCTACTAGGCCTTAATTCATGGTTCGCATTCACACTTTCACAGGGATATGCTCTGCCTAGTTTGTTCCTCTCCGAGAGACTTCGGCGATCACGATCTAGATCTACGCTGTTGGTTGCATCCATTGACGAGCTCGTCGGGTTCACCGCAGCTCTAGATTCGCCCGCCATCGGAGTGGCCAAAGAGCTGCAGTCGTCCCTCCCGAACCGAAAAATCGCCGATCCTTCTTCATTGGATTTCTCCCTCATCCGGCAACCATTTGAGGTGAAACAAAGTCCAGACCAGTTCGCCTCCTCCCCACGAACAGCCTGGCTGCAAACTAACCATGTTGAGCTCGCGAAGCCTACTTTGTCAATCCTTGGTGGTGGGTTTAAGCGGTTTTCACCGGAGAAGCATCAACTCACGGTGAACAAGAGGGCTTCGATCCAAGCATGGGGGCAGCGGCGGTGCAAGGGAGGACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.36

Weight (kDa)

10.27

Isoelectric Point (pI)

77.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AccII CGCG 1 cut(s) 347
AciI CCGC 5 cut(s) 156, 174, 385, 451, 454
AclWI GGATC 2 cut(s) 224, 427
AcoI YGGCCR 1 cut(s) 186
AfiI CCNNNNNNNGG 3 cut(s) 179, 258, 442
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 4 cut(s) 142, 161, 196, 343
AluI AGCT 4 cut(s) 142, 161, 196, 343
Alw21I GWGCWC 2 cut(s) 144, 345
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 224, 427
AoxI GGCC 2 cut(s) 19, 186
ApeKI GCWGC 4 cut(s) 158, 196, 322, 448
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 4 cut(s) 145, 286, 384, 427
AvaII GGWCC 1 cut(s) 467
BalI TGGCCA 1 cut(s) 188
BanII GRGCYC 2 cut(s) 144, 345
Bbv12I GWGCWC 2 cut(s) 144, 345
BbvI GCAGC 4 cut(s) 170, 183, 309, 460
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 4 cut(s) 17, 69, 108, 164
BfmI CTRYAG 1 cut(s) 197
BglII AGATCT 1 cut(s) 110
BisI GCNGC 5 cut(s) 159, 197, 323, 449, 452
BlsI GCNGC 5 cut(s) 160, 198, 324, 450, 453
Bme1390I CCNGG 1 cut(s) 319
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 319
BmsI GCATC 2 cut(s) 137, 412
BsaBI GATNNNNATC 2 cut(s) 103, 109
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 258, 442
Bse1I ACTGG 1 cut(s) 292
Bse8I GATNNNNATC 2 cut(s) 103, 109
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 128, 255
BseJI GATNNNNATC 2 cut(s) 103, 109
BseLI CCNNNNNNNGG 3 cut(s) 179, 258, 442
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 292
BseXI GCAGC 4 cut(s) 170, 183, 309, 460
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 2 cut(s) 21, 188
BsiHKAI GWGCWC 2 cut(s) 144, 345
BsiSI CCGG 2 cut(s) 259, 395
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 3 cut(s) 179, 258, 442
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 2 cut(s) 21, 188
Bsp1286I GDGCHC 2 cut(s) 144, 345
Bsp143I GATC 5 cut(s) 98, 104, 110, 229, 432
Bsp68I TCGCGA 1 cut(s) 347
BspACI CCGC 5 cut(s) 156, 174, 385, 451, 454
BspANI GGCC 2 cut(s) 21, 188
BspFNI CGCG 1 cut(s) 347
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 2 cut(s) 224, 427
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 5 cut(s) 98, 104, 110, 229, 432
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 415
BstC8I GCNNGC 2 cut(s) 174, 345
BstF5I GGATG 2 cut(s) 128, 255
BstFNI CGCG 1 cut(s) 347
BstKTI GATC 5 cut(s) 101, 107, 113, 232, 435
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 5 cut(s) 98, 104, 110, 229, 432
BstMWI GCNNNNNNNGC 2 cut(s) 10, 349
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 4 cut(s) 170, 183, 309, 460
BstX2I RGATCY 1 cut(s) 110
BstXI CCANNNNNNTGG 1 cut(s) 184
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 2 cut(s) 21, 188
BtsCI GGATG 2 cut(s) 128, 255
BtuMI TCGCGA 1 cut(s) 347
Cac8I GCNNGC 2 cut(s) 174, 345
Cfr13I GGNCC 1 cut(s) 467
CviAII CATG 4 cut(s) 5, 30, 335, 441
DpnI GATC 5 cut(s) 100, 106, 112, 231, 434
DpnII GATC 5 cut(s) 98, 104, 110, 229, 432
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 186
Ecl136II GAGCTC 2 cut(s) 142, 343
Eco130I CCWWGG 1 cut(s) 367
Eco147I AGGCCT 1 cut(s) 21
Eco24I GRGCYC 2 cut(s) 144, 345
Eco47I GGWCC 1 cut(s) 467
Eco53kI GAGCTC 2 cut(s) 142, 343
EcoICRI GAGCTC 2 cut(s) 142, 343
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 144, 345
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 4 cut(s) 8, 33, 338, 444
FaiI YATR 6 cut(s) 6, 31, 60, 336, 442, 472
FaqI GGGAC 1 cut(s) 190
FatI CATG 4 cut(s) 4, 29, 334, 440
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 5 cut(s) 159, 197, 323, 449, 452
FokI GGATG 2 cut(s) 115, 242
FriOI GRGCYC 2 cut(s) 144, 345
Fsp4HI GCNGC 5 cut(s) 159, 197, 323, 449, 452
FspBI CTAG 4 cut(s) 17, 69, 108, 164
GluI GCNGC 5 cut(s) 159, 197, 323, 449, 452
HaeIII GGCC 2 cut(s) 21, 188
HapII CCGG 2 cut(s) 259, 395
Hin1II CATG 4 cut(s) 8, 33, 338, 444
HinfI GANTC 1 cut(s) 167
HpaII CCGG 2 cut(s) 259, 395
HphI GGTGA 4 cut(s) 145, 286, 384, 427
Hpy166II GTNNAC 2 cut(s) 153, 418
Hpy188I TCNGA 2 cut(s) 85, 182
Hpy188III TCNNGA 6 cut(s) 102, 108, 164, 211, 287, 346
Hpy8I GTNNAC 2 cut(s) 153, 418
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 243
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4V TGCA 5 cut(s) 4, 128, 199, 325, 459
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 349
Hsp92II CATG 4 cut(s) 8, 33, 338, 444
Kzo9I GATC 5 cut(s) 98, 104, 110, 229, 432
LpnPI CCDG 7 cut(s) 38, 272, 300, 304, 305, 331, 408
Lsp1109I GCAGC 4 cut(s) 170, 183, 309, 460
LweI GCATC 2 cut(s) 137, 412
MaeI CTAG 4 cut(s) 17, 69, 108, 164
MalI GATC 5 cut(s) 100, 106, 112, 231, 434
MboI GATC 5 cut(s) 98, 104, 110, 229, 432
MboII GAAGA 1 cut(s) 228
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 2 cut(s) 144, 345
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 1 cut(s) 25
MluNI TGGCCA 1 cut(s) 188
MnlI CCTC 8 cut(s) 89, 218, 263, 265, 310, 313, 417, 458
Mox20I TGGCCA 1 cut(s) 188
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 188
MseI TTAA 2 cut(s) 24, 381
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 451
MspI CCGG 2 cut(s) 259, 395
MspR9I CCNGG 1 cut(s) 319
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 319
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 10, 349
NdeII GATC 5 cut(s) 98, 104, 110, 229, 432
NlaIII CATG 4 cut(s) 8, 33, 338, 444
NruI TCGCGA 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 21
PcsI WCGNNNNNNNCGW 2 cut(s) 100, 209
PctI GAATGC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 5 cut(s) 160, 198, 324, 450, 453
Psp124BI GAGCTC 2 cut(s) 144, 345
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspPI GGNCC 1 cut(s) 467
PstI CTGCAG 1 cut(s) 201
PsuI RGATCY 1 cut(s) 110
RruI TCGCGA 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 182
SacI GAGCTC 2 cut(s) 144, 345
SaqAI TTAA 2 cut(s) 24, 381
SatI GCNGC 5 cut(s) 159, 197, 323, 449, 452
Sau3AI GATC 5 cut(s) 98, 104, 110, 229, 432
Sau96I GGNCC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 2 cut(s) 144, 345
SetI ASST 5 cut(s) 144, 163, 198, 276, 345
SfaNI GCATC 2 cut(s) 137, 412
SfcI CTRYAG 1 cut(s) 197
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 1 cut(s) 25
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 5 cut(s) 156, 174, 385, 451, 454
SspMI CTAG 4 cut(s) 17, 69, 108, 164
SstI GAGCTC 2 cut(s) 144, 345
StuI AGGCCT 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 431
TasI AATT 1 cut(s) 25
TauI GCSGC 1 cut(s) 454
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 24, 381
Tru9I TTAA 2 cut(s) 24, 381
TseI GCWGC 4 cut(s) 158, 196, 322, 448
TspDTI ATGAA 3 cut(s) 18, 21, 228
VpaK11BI GGWCC 1 cut(s) 467
XbaI TCTAGA 2 cut(s) 107, 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XspI CTAG 4 cut(s) 17, 69, 108, 164
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.