Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Forward (+)

31611242 .. 31622115

Gene Structure 10874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAACAACGAACCGAGTCAAGTCATAGAGAACACTGCGAGGAGCTGTGAGCTTATCGATGCTGAGATTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGGCGAGGATGGTCTGCTTCCAAATAGTGGAGCAAGCGCTTGTGCAGAGGGAGAGAAAAAATACTTACCAAGATGCAAAGAACTCCACAACCTAGAATTCCACTTAAGCGGTCATTCAATAGAGCATTTATCTGAACAAGACCAAACAAATGTTTTGAACCATTGGAGGAGAGACTCTTCAAATAACTTGTCAACTGTGAAGCCATCCCACCATTTTTGTTTGAATCTTCGACCGGTGTCATTGATTGGTCTTGATTTGGTGGAGATACAATTAGATCCCACGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

142

Amino Acids

15.87

Weight (kDa)

5.15

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	236
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	244
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	5 cut(s)	86, 258, 298, 321, 364
AluBI	AGCT	3 cut(s)	45, 52, 76
AluI	AGCT	3 cut(s)	45, 52, 76
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	410
Aor51HI	AGCGCT	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AsiGI	ACCGGT	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	146
BauI	CACGAG	1 cut(s)	421
BccI	CCATC	2 cut(s)	143, 352
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	244
BmsI	GCATC	3 cut(s)	49, 103, 203
BoxI	GACNNNNGTC	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	130
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	373
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	118, 154, 344
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	55, 322
BsgI	GTGCAG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	374
BshTI	ACCGGT	1 cut(s)	373
BshVI	ATCGAT	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	415
BspACI	CCGC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	57
BspPI	GGATC	1 cut(s)	410
BspTI	CTTAAG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	415
BssSI	CACGAG	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	322
BstAFI	CTTAAG	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	118, 154, 344
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	415
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstPAI	GACNNNNGTC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
Bsu15I	ATCGAT	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	118, 154, 344
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	373
ClaI	ATCGAT	1 cut(s)	57
CspAI	ACCGGT	1 cut(s)	373
CspCI	CAANNNNNGTGG	2 cut(s)	338, 373
CviJI	RGCY	4 cut(s)	45, 52, 76, 343
CviKI_1	RGCY	4 cut(s)	45, 52, 76, 343
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	130
Eco47III	AGCGCT	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaiI	YATR	3 cut(s)	26, 96, 110
FokI	GGATG	3 cut(s)	125, 161, 331
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	180
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	3 cut(s)	16, 314, 364
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	4 cut(s)	71, 116, 185, 216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	63
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	415
LmnI	GCTCC	2 cut(s)	42, 170
LpnPI	CCDG	1 cut(s)	387
LweI	GCATC	3 cut(s)	49, 103, 203
MaeI	CTAG	1 cut(s)	233
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	2 cut(s)	309, 359
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	2 cut(s)	236, 410
MlyI	GAGTC	2 cut(s)	25, 308
MnlI	CCTC	4 cut(s)	33, 139, 181, 300
MseI	TTAA	2 cut(s)	123, 245
MspCI	CTTAAG	1 cut(s)	244
MspI	CCGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	364
PflMI	CCANNNNNTGG	1 cut(s)	167
PinAI	ACCGGT	1 cut(s)	373
PleI	GAGTC	2 cut(s)	24, 308
PpsI	GAGTC	2 cut(s)	24, 308
PshAI	GACNNNNGTC	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	123, 245
Sau3AI	GATC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	25, 308
SetI	ASST	4 cut(s)	47, 54, 78, 234
SfaNI	GCATC	3 cut(s)	49, 103, 203
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	2 cut(s)	236, 410
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	57, 370
TasI	AATT	2 cut(s)	236, 410
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	123, 245
Tru9I	TTAA	2 cut(s)	123, 245
TscAI	CASTG	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	236
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.