Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Forward (+)

3843924 .. 3869963

Gene Structure 26040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCAGAAAATGCTGCTCTCGGACGGAAATCACCCGATTTCTTCTTCAACGGATTTCTCCCTCATCCGGCAACCTTTTGAGGTGAAACAAAGCCCAGACCAGTTCCCCACTTCCCCACGAACAGCCCGGTGTATCACTTCATCCTCCGACAATGCCAAAGTCGCCGCTAAGTTGGCCAAAGCGTCCGCCAGCAGCTTGCGCTCGAGTAGTTTAGGACGGAGTCCTCGTATGAGAGGTCCGAGCAACAATAAAAACGTTAACTCCAAGCTTTGGGCTGGGCTTCACTCGCCACCGTTGCCGCCGTTCGGAGTAGGAGTCGGAGGAGACAACGCTCCGAACACCGCCACCCACTTCACCCCGCATCCCGGTGTGCCCCGAAAATCATGGGCGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.06

Weight (kDa)

10.43

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	270
AciI	CCGC	6 cut(s)	165, 186, 299, 342, 359, 389
AclI	AACGTT	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	174
AfiI	CCNNNNNNNGG	4 cut(s)	66, 270, 305, 365
AgsI	TTSAA	1 cut(s)	48
AluBI	AGCT	2 cut(s)	195, 268
AluI	AGCT	2 cut(s)	195, 268
Alw26I	GTCTC	1 cut(s)	318
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	13, 192
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	2 cut(s)	127, 366
AsuHPI	GGTGA	3 cut(s)	23, 94, 346
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	286
BcnI	CCSGG	2 cut(s)	127, 366
BcoDI	GTCTC	1 cut(s)	318
BisI	GCNGC	4 cut(s)	14, 165, 193, 299
BlsI	GCNGC	4 cut(s)	15, 166, 194, 300
Bme1390I	CCNGG	2 cut(s)	127, 366
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	236
BmrFI	CCNGG	2 cut(s)	127, 366
BmsI	GCATC	1 cut(s)	370
BpuMI	CCSGG	2 cut(s)	127, 366
BsaXI	ACNNNNNCTCC	6 cut(s)	211, 241, 245, 275, 300, 330
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 270, 305, 365
Bse1I	ACTGG	1 cut(s)	100
BseGI	GGATG	3 cut(s)	63, 140, 361
BseLI	CCNNNNNNNGG	4 cut(s)	66, 270, 305, 365
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	3 cut(s)	67, 127, 366
BslI	CCNNNNNNNGG	4 cut(s)	66, 270, 305, 365
BsmAI	GTCTC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	375
BspACI	CCGC	6 cut(s)	165, 186, 299, 342, 359, 389
BspANI	GGCC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	190, 197
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	63, 140, 361
BstHHI	GCGC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 161, 173, 198, 286, 295
BstSCI	CCNGG	2 cut(s)	125, 364
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	3 cut(s)	63, 140, 361
Cac8I	GCNNGC	2 cut(s)	190, 197
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	236
CseI	GACGC	1 cut(s)	171
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	7 cut(s)	93, 125, 176, 195, 268, 275, 280
CviKI_1	RGCY	7 cut(s)	93, 125, 176, 195, 268, 275, 280
DdeI	CTNAG	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	202
FaeI	CATG	1 cut(s)	387
FaiI	YATR	2 cut(s)	230, 385
FatI	CATG	1 cut(s)	383
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	4 cut(s)	14, 165, 193, 299
FokI	GGATG	3 cut(s)	50, 127, 348
Fsp4HI	GCNGC	4 cut(s)	14, 165, 193, 299
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	4 cut(s)	14, 165, 193, 299
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	3 cut(s)	67, 127, 366
HgaI	GACGC	1 cut(s)	171
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	387
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	220, 315
HpaI	GTTAAC	1 cut(s)	259
HpaII	CCGG	3 cut(s)	67, 127, 366
HphI	GGTGA	3 cut(s)	23, 94, 346
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	6 cut(s)	22, 148, 240, 308, 320, 336
Hpy8I	GTNNAC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 161, 173, 198, 286, 295
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	387
HspAI	GCGC	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	7 cut(s)	80, 108, 113, 140, 202, 261, 379
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	1 cut(s)	370
MaeII	ACGT	1 cut(s)	255
MboII	GAAGA	2 cut(s)	33, 36
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	176
MluNI	TGGCCA	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	229, 324
MmeI	TCCRAC	2 cut(s)	171, 298
MnlI	CCTC	6 cut(s)	71, 73, 154, 227, 234, 314
Mox20I	TGGCCA	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	176
MspI	CCGG	3 cut(s)	67, 127, 366
MspR9I	CCNGG	2 cut(s)	127, 366
MwoI	GCNNNNNNNGC	6 cut(s)	10, 161, 173, 198, 286, 295
NciI	CCSGG	2 cut(s)	127, 366
NlaIII	CATG	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PflFI	GACNNNGTC	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	15, 166, 194, 300
PleI	GAGTC	2 cut(s)	228, 323
PpsI	GAGTC	2 cut(s)	228, 323
Psp1406I	AACGTT	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	236
PspXI	VCTCGAGB	1 cut(s)	202
PsyI	GACNNNGTC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	4 cut(s)	14, 165, 193, 299
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	2 cut(s)	229, 324
ScrFI	CCNGG	2 cut(s)	127, 366
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	6 cut(s)	76, 84, 197, 238, 258, 270
SfaNI	GCATC	1 cut(s)	370
Sfr274I	CTCGAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SsiI	CCGC	6 cut(s)	165, 186, 299, 342, 359, 389
StyD4I	CCNGG	2 cut(s)	125, 364
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	203
TauI	GCSGC	2 cut(s)	167, 301
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	2 cut(s)	13, 192
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	3 cut(s)	39, 65, 232
Tth111I	GACNNNGTC	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	236
XhoI	CTCGAG	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.