Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Reverse (-)

36760444 .. 36768797

Gene Structure 8354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAGGTGCTGCTCATTATGGTGGCAGGGGACCAAGCATATGGGATAACTATACCCACAGATATCCTGAAAATGGATGGCTCAGGATTGCAAAAATCTTATCCTTCATCTGCTCTGAAACAGTACTCTAACACATGCTTTTCTTCACGTAGTTGGATTGTAGATAATCCGGATCAAGGGTCCCTAAGTCACATCAAGAGGCCTAGAGATAGAGGAATTAGACTACTAAGCAACCAGCCCGCGCAATCACGCAACAGGGCGGAAAATACTCAAAAGATGATGCAAAGACTGTTGCATTTTGTCATCTGCGGGGTGTGGTGCCTTTGTTGCATTTTCACCGAGGGAATGAACAATGAACTGAGTCAAGTCATAGAGAACACTGCGAGGAGCTGTGAGCTTGCGATGCTGAGCTTGCAAAGCTACTTGTTGAAACAAATCATAAAGAAGGAAATATGGATGCAGTTTTTAATGTCCTTGGTGAAATGGCCGAGGATGGTCTGCTTCCAAATAGTGGAGCAAGCGCATGTGCGAGAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

179

Amino Acids

20.5

Weight (kDa)

9.17

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccII	CGCG	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	3 cut(s)	240, 260, 309
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	485
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	73, 176, 511
AgsI	TTSAA	1 cut(s)	430
AluBI	AGCT	4 cut(s)	390, 397, 411, 420
AluI	AGCT	4 cut(s)	390, 397, 411, 420
AlwI	GGATC	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	2 cut(s)	200, 485
ApeKI	GCWGC	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	244, 523
AspS9I	GGNCC	2 cut(s)	31, 180
AsuHPI	GGTGA	2 cut(s)	328, 490
AvaII	GGWCC	2 cut(s)	31, 180
BanI	GGYRCC	1 cut(s)	318
BccI	CCATC	2 cut(s)	71, 487
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	12
BmcAI	AGTACT	1 cut(s)	125
Bme18I	GGWCC	2 cut(s)	31, 180
BmgT120I	GGNCC	2 cut(s)	31, 180
BmiI	GGNNCC	4 cut(s)	32, 181, 182, 320
BmsI	GCATC	3 cut(s)	270, 393, 447
Bpu10I	CCTNAGC	1 cut(s)	82
Bpu1102I	GCTNAGC	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	339, 474, 488
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 176, 511
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	339, 474, 488
BseGI	GGATG	3 cut(s)	82, 462, 498
BseLI	CCNNNNNNNGG	3 cut(s)	73, 176, 511
BseMII	CTCAG	3 cut(s)	96, 350, 398
BseRI	GAGGAG	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	202, 487
BshNI	GGYRCC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	2 cut(s)	44, 166
BslI	CCNNNNNNNGG	3 cut(s)	73, 176, 511
BsmFI	GGGAC	2 cut(s)	44, 166
BsnI	GGCC	2 cut(s)	202, 487
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	172
Bsp1720I	GCTNAGC	1 cut(s)	407
BspACI	CCGC	3 cut(s)	240, 260, 309
BspANI	GGCC	2 cut(s)	202, 487
BspCNI	CTCAG	3 cut(s)	95, 351, 399
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	4 cut(s)	32, 181, 182, 320
BspPI	GGATC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	318
BssECI	CCNNGG	3 cut(s)	339, 474, 488
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	123, 291
BstBAI	YACGTR	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	240, 399, 413, 519
BstDEI	CTNAG	5 cut(s)	82, 185, 227, 359, 407
BstF5I	GGATG	3 cut(s)	82, 462, 498
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	244, 523
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	4 cut(s)	327, 403, 412, 417
BstNSI	RCATGY	2 cut(s)	138, 527
BstUI	CGCG	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	202, 487
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	82, 462, 498
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	4 cut(s)	240, 399, 413, 519
CfoI	GCGC	2 cut(s)	244, 523
Cfr13I	GGNCC	2 cut(s)	31, 180
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	135, 524
CviJI	RGCY	8 cut(s)	81, 202, 238, 390, 397, 411, 420, 487
CviKI_1	RGCY	8 cut(s)	81, 202, 238, 390, 397, 411, 420, 487
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	5 cut(s)	82, 185, 227, 359, 407
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	485
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	31, 180
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	2 cut(s)	138, 527
FaiI	YATR	9 cut(s)	20, 40, 42, 53, 136, 371, 440, 454, 525
FaqI	GGGAC	2 cut(s)	44, 166
FatI	CATG	2 cut(s)	134, 523
FauI	CCCGC	2 cut(s)	247, 302
FauNDI	CATATG	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	3 cut(s)	89, 469, 505
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	243, 522
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	202, 487
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	2 cut(s)	244, 523
Hin1II	CATG	2 cut(s)	138, 527
Hin6I	GCGC	2 cut(s)	242, 521
HinP1I	GCGC	2 cut(s)	242, 521
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	2 cut(s)	328, 490
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	4 cut(s)	67, 84, 170, 196
HpyAV	CCTTC	2 cut(s)	114, 439
HpyCH4III	ACNGT	2 cut(s)	123, 291
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	6 cut(s)	91, 283, 295, 330, 415, 460
HpyF10VI	GCNNNNNNNGC	4 cut(s)	327, 403, 412, 417
HpyF3I	CTNAG	5 cut(s)	82, 185, 227, 359, 407
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	138, 527
HspAI	GCGC	2 cut(s)	242, 521
KflI	GGGWCCC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	2 cut(s)	387, 514
LpnPI	CCDG	6 cut(s)	12, 69, 80, 183, 241, 248
LweI	GCATC	3 cut(s)	270, 393, 447
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	135
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	192, 206, 334, 378, 483, 526
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	1 cut(s)	467
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	327, 403, 412, 417
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	138, 527
NlaIV	GGNNCC	4 cut(s)	32, 181, 182, 320
NmeAIII	GCCGAG	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	2 cut(s)	138, 527
PceI	AGGCCT	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
Ppu21I	YACGTR	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
PspN4I	GGNNCC	4 cut(s)	32, 181, 182, 320
PspPI	GGNCC	2 cut(s)	31, 180
PspPPI	RGGWCCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	31, 180
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	1 cut(s)	370
SetI	ASST	6 cut(s)	9, 151, 392, 399, 413, 422
SfaNI	GCATC	3 cut(s)	270, 393, 447
SinI	GGWCC	2 cut(s)	31, 180
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	216
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	3 cut(s)	240, 260, 309
SspMI	CTAG	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	123, 291
TaiI	ACGT	1 cut(s)	151
TasI	AATT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	17, 96, 362, 369
TspRI	CASTG	1 cut(s)	385
Van91I	CCANNNNNTGG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	31, 180
XceI	RCATGY	2 cut(s)	138, 527
XspI	CTAG	1 cut(s)	204
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.