Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012694

Physical Location & Seq

Genomic Coordinates Forward (+)

44751227 .. 44759489

Gene Structure 8263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAAAAAATGGCTCGAGCTGCAGCCCGACGCGGAAATCGCCCAAAATTTTCTCAACTCGATTTCTCCCTCATCCGGCAACCATTTGAGGTGAAACAAAGCCCAGACCAGTTCGCCTCCTCCCCACGAACAACCGGTGCCCTCATCTCCTCCCCATGCGGCGGCTACACGGCGGTGGAGCTCGCTCCCACACTCTCATGGGTAGGGGGTCTACTTATGGATGTCAAAATTCCACAACGTTTGTCCGCACATGGTGCCGCTCCCCTTAGGGAAGTTTGCTTGTCCAAAGCGTTGACCCCTCCGTTAGCGGACTATGTAGTTGTAGCTGAATCTGCAGGTAGGCAAATTCCCATTTGCTTATCTCGGAGAGAATCAAGGATGATTTCAACAGAAGATATGCTGGTGGAAAAGATGGGATTGCAACAGCCAATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.83

Weight (kDa)

9.21

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0047181
rosa_multiflora	Rmu_ssc0000342.1_g000003
rosa_roxburghii	Rroxscaffold_2G00107630 Rroxscaffold_2G00117130 Rroxscaffold_2G00119810 Rroxscaffold_3G00235710 Rroxscaffold_3G00235720 Rroxscaffold_3G00235730 Rroxscaffold_3G00235750 Rroxscaffold_3G00254530 Rroxscaffold_4G00297880 Rroxscaffold_4G00318560 Rroxscaffold_4G00324620 Rroxscaffold_5G00369650 Rroxscaffold_6G00389780 Rroxscaffold_6G00392420 Rroxscaffold_7G00194730 Rroxscaffold_7G00202830
rosa_samantha	Rh6BG198300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
AccB1I	GGYRCC	2 cut(s)	137, 254
AccBSI	CCGCTC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	211
AccII	CGCG	1 cut(s)	33
AciI	CCGC	7 cut(s)	33, 159, 162, 173, 246, 258, 308
AclI	AACGTT	1 cut(s)	238
AcsI	RAATTY	3 cut(s)	47, 228, 345
AdeI	CACNNNGTG	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	75, 161
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	387
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	3 cut(s)	20, 181, 326
AluI	AGCT	3 cut(s)	20, 181, 326
Alw21I	GWGCWC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	15
ApeKI	GCWGC	2 cut(s)	20, 23
ApoI	RAATTY	3 cut(s)	47, 228, 345
AsiGI	ACCGGT	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	15
AxyI	CCTNAGG	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	142
BanI	GGYRCC	2 cut(s)	137, 254
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	7, 35
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	1 cut(s)	186
BfmI	CTRYAG	2 cut(s)	21, 333
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	5 cut(s)	21, 24, 160, 163, 258
BlsI	GCNGC	5 cut(s)	22, 25, 161, 164, 259
BmeT110I	CYCGRG	1 cut(s)	15
BmiI	GGNNCC	2 cut(s)	139, 256
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 161
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	266
BseGI	GGATG	3 cut(s)	72, 226, 384
BseLI	CCNNNNNNNGG	2 cut(s)	75, 161
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	109, 139
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	7, 35
Bsh1236I	CGCG	1 cut(s)	33
BshNI	GGYRCC	2 cut(s)	137, 254
BshTI	ACCGGT	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	76, 135
BslI	CCNNNNNNNGG	2 cut(s)	75, 161
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	142, 183
BspACI	CCGC	7 cut(s)	33, 159, 162, 173, 246, 258, 308
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	139, 256
BspMAI	CTGCAG	2 cut(s)	25, 337
BspMI	ACCTGC	1 cut(s)	326
BspT107I	GGYRCC	2 cut(s)	137, 254
BsrBI	CCGCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	3 cut(s)	72, 226, 384
BstFNI	CGCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 39, 254, 332
BstSFI	CTRYAG	2 cut(s)	21, 333
BstSLI	GKGCMC	1 cut(s)	142
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	7, 35
Bsu36I	CCTNAGG	1 cut(s)	266
BtsCI	GGATG	3 cut(s)	72, 226, 384
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	134
CseI	GACGC	1 cut(s)	39
CspAI	ACCGGT	1 cut(s)	134
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	3 cut(s)	156, 198, 251
CviJI	RGCY	8 cut(s)	14, 20, 26, 102, 165, 181, 326, 427
CviKI_1	RGCY	8 cut(s)	14, 20, 26, 102, 165, 181, 326, 427
DdeI	CTNAG	1 cut(s)	266
DraIII	CACNNNGTG	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	3 cut(s)	159, 201, 254
FaiI	YATR	6 cut(s)	157, 199, 218, 252, 315, 398
FatI	CATG	3 cut(s)	155, 197, 250
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	5 cut(s)	21, 24, 160, 163, 258
FokI	GGATG	3 cut(s)	59, 233, 391
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	5 cut(s)	21, 24, 160, 163, 258
GluI	GCNGC	5 cut(s)	21, 24, 160, 163, 258
HapII	CCGG	2 cut(s)	76, 135
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	159, 201, 254
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	329, 371
HpaII	CCGG	2 cut(s)	76, 135
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	212, 294
Hpy188I	TCNGA	1 cut(s)	366
Hpy8I	GTNNAC	2 cut(s)	212, 294
Hpy99I	CGWCG	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	23, 335, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 39, 254, 332
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	3 cut(s)	159, 201, 254
LmnI	GCTCC	3 cut(s)	178, 190, 265
LpnPI	CCDG	6 cut(s)	89, 117, 122, 148, 321, 386
Lsp1109I	GCAGC	2 cut(s)	7, 35
MaeII	ACGT	1 cut(s)	238
MbiI	CCGCTC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	142, 183
MluCI	AATT	3 cut(s)	47, 228, 345
MnlI	CCTC	7 cut(s)	80, 82, 127, 130, 152, 160, 309
MslI	CAYNNNNRTG	2 cut(s)	173, 196
MspI	CCGG	2 cut(s)	76, 135
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	20, 39, 254, 332
NlaIII	CATG	3 cut(s)	159, 201, 254
NlaIV	GGNNCC	2 cut(s)	139, 256
OliI	CACNNNNGTG	1 cut(s)	173
PaeR7I	CTCGAG	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	329, 371
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	22, 25, 161, 164, 259
Psp124BI	GAGCTC	1 cut(s)	183
Psp1406I	AACGTT	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	139, 256
PspXI	VCTCGAGB	1 cut(s)	15
PstI	CTGCAG	2 cut(s)	25, 337
RseI	CAYNNNNRTG	2 cut(s)	173, 196
SacI	GAGCTC	1 cut(s)	183
SatI	GCNGC	5 cut(s)	21, 24, 160, 163, 258
SduI	GDGCHC	2 cut(s)	142, 183
SetI	ASST	6 cut(s)	22, 93, 183, 241, 328, 340
SfcI	CTRYAG	2 cut(s)	21, 333
Sfr274I	CTCGAG	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	173, 196
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	3 cut(s)	47, 228, 345
SsiI	CCGC	7 cut(s)	33, 159, 162, 173, 246, 258, 308
SstI	GAGCTC	1 cut(s)	183
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	16, 60
TasI	AATT	3 cut(s)	47, 228, 345
TauI	GCSGC	3 cut(s)	162, 165, 260
TfiI	GAWTC	2 cut(s)	329, 371
TseI	GCWGC	2 cut(s)	20, 23
TspGWI	ACGGA	1 cut(s)	291
XapI	RAATTY	3 cut(s)	47, 228, 345
XhoI	CTCGAG	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.