Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010626

Physical Location & Seq

Genomic Coordinates Forward (+)

22526642 .. 22528354

Gene Structure 1713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGACATGGGCTGCAGAGATGGCTGTTGGAATGGATACTGGGGTCCCATGGGTCATGTGCAAGGAAGATGATGCCCCAGACCCTGTGTACCATGGAGGATACCATGGAGGAACTAACTTTGGAAGAACTGCTGGAGGCCCTTTTATTATTACCAGCTATGACTACGATGCCCCATTGATGAATATGTCACATGTATTCTCTTCAAAGCCAGGAGGTTGTGCAGCATTTCTCTCAAACTACAATGCAAACTCAGCTGCAACGGTGACTTTCAATGACCGAAACTATGAGCTCCCTGCTTGGTCTATCAGCGTCCTTCCAGACTGCGAAAATGTTGTATTCAACCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

116

Amino Acids

12.63

Weight (kDa)

4.49

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	34 - 62	5e-08	Glycosyl hydrolases family 35
GHD	PF17834	63 - 114	7.3e-22	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010626)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0266321 RchiOBHm_Chr6g0287401
rosa_laevigata	RLG00000012482
rosa_roxburghii	Rroxscaffold_7G00180970
rosa_rugosa	Rorug06G0188100 Rorug06G0189500
rosa_samantha	Rh1BG003600 Rh5DG181900 Rh6AG299100 Rh6BG305800 Rh6BG305900 Rh6CG303300 Rh6CG303500 Rh6CG303700 Rh6CG304900 Rh6CG305000 Rh6CG313200 Rh6CG314300 Rh6CG314500 Rh6DG296500 Rh6DG297700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	204, 271, 340
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	3 cut(s)	156, 254, 289
AluI	AGCT	3 cut(s)	156, 254, 289
Alw21I	GWGCWC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	11, 221, 254
AspS9I	GGNCC	2 cut(s)	43, 137
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	43
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	233, 241
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	210
BciVI	GTATCC	2 cut(s)	28, 92
BfaI	CTAG	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	12
BfuI	GTATCC	2 cut(s)	28, 92
BisI	GCNGC	3 cut(s)	12, 222, 255
BlsI	GCNGC	3 cut(s)	13, 223, 256
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	43, 137
BmiI	GGNNCC	2 cut(s)	44, 45
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	61, 157
BmuI	ACTGGG	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	47, 91, 103
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	47, 91, 103
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	233, 241
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp19I	CCATGG	3 cut(s)	47, 91, 103
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	263
BspLI	GGNNCC	2 cut(s)	44, 45
BspMAI	CTGCAG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	47, 91, 103
BssT1I	CCWWGG	3 cut(s)	47, 91, 103
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	250
BstDSI	CCRYGG	3 cut(s)	47, 91, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 251
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	233, 241
BsuI	GTATCC	2 cut(s)	28, 92
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	3 cut(s)	47, 91, 103
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	43, 137
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	6 cut(s)	6, 48, 55, 92, 104, 191
CviJI	RGCY	7 cut(s)	11, 23, 138, 156, 208, 254, 289
CviKI_1	RGCY	7 cut(s)	11, 23, 138, 156, 208, 254, 289
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	3 cut(s)	47, 91, 103
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	2 cut(s)	43, 137
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	3 cut(s)	47, 91, 103
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	3 cut(s)	47, 91, 103
FaeI	CATG	6 cut(s)	9, 51, 58, 95, 107, 194
FaiI	YATR	9 cut(s)	7, 49, 56, 93, 105, 159, 185, 192, 285
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	6 cut(s)	5, 47, 54, 91, 103, 190
Fnu4HI	GCNGC	3 cut(s)	12, 222, 255
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	3 cut(s)	12, 222, 255
FspBI	CTAG	1 cut(s)	349
GluI	GCNGC	3 cut(s)	12, 222, 255
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	138
HgaI	GACGC	1 cut(s)	298
Hin1II	CATG	6 cut(s)	9, 51, 58, 95, 107, 194
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	5 cut(s)	14, 60, 221, 245, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 251
HpyF3I	CTNAG	1 cut(s)	250
Hsp92II	CATG	6 cut(s)	9, 51, 58, 95, 107, 194
KflI	GGGWCCC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	9 cut(s)	24, 90, 96, 117, 166, 195, 222, 306, 330
Lsp1109I	GCAGC	2 cut(s)	233, 241
LweI	GCATC	2 cut(s)	61, 157
MaeI	CTAG	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	186, 262
MboII	GAAGA	3 cut(s)	77, 135, 192
MhlI	GDGCHC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	4 cut(s)	89, 101, 128, 206
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	20, 251
NcoI	CCATGG	3 cut(s)	47, 91, 103
NlaIII	CATG	6 cut(s)	9, 51, 58, 95, 107, 194
NlaIV	GGNNCC	2 cut(s)	44, 45
NmuCI	GTSAC	2 cut(s)	186, 262
NspI	RCATGY	1 cut(s)	194
PciI	ACATGT	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	13, 223, 256
PpuMI	RGGWCCY	1 cut(s)	43
PscI	ACATGT	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	44, 45
PspPI	GGNCC	2 cut(s)	43, 137
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	291
SatI	GCNGC	3 cut(s)	12, 222, 255
Sau96I	GGNCC	2 cut(s)	43, 137
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	158, 217, 256, 291
SfaNI	GCATC	2 cut(s)	61, 157
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	349
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	3 cut(s)	47, 91, 103
TaaI	ACNGT	1 cut(s)	262
TaqII	GACCGA	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	186, 262
TseI	GCWGC	3 cut(s)	11, 221, 254
Tsp45I	GTSAC	2 cut(s)	186, 262
TspDTI	ATGAA	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	43
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.