Rorug06G0188100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010626
Physical Location & Seq
Reverse (-)
30099230 .. 30102115
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0188100.1

Sequence Viewer

Length: 402 bp
ATGTGTGGATCAACCTACACTGATGAAGAAATTGAGCGCTGTTATGGAGAATTTTATGAGGATGTTCATACAGAGTTCTTGAAGTTTGGAGAAATTATAAATTTCAAGGTGTGCATAAATGGTGCACCCCACTTGCGGGGAAATGTGTACGTACAGTACCGTGCACTGGAGTCAGCTTTGGTGGCGCATCAATCTATCAATGGTCGCTACTTTGCTGGGAAGCAGCTAAGTTGTGACTTCATCAATGTGACGAGATGGAAGGTTGCCATATGTGGGGAATGTGTGAAGTCGAGGTACAAGCAGACATGTTCCCGTGGTAGGACATGCAATTTTATCCACTGTTTCCGCAATCCTGGTGGAGACTATGAATGGGCTGATAGTGATAGACCACCCCCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.32

Weight (kDa)

7.53

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AciI CCGC 2 cut(s) 136, 346
AclWI GGATC 1 cut(s) 16
AcsI RAATTY 2 cut(s) 50, 100
AfaI GTAC 4 cut(s) 149, 153, 158, 296
AfeI AGCGCT 1 cut(s) 38
AfiI CCNNNNNNNGG 5 cut(s) 135, 136, 166, 273, 318
AflIII ACRYGT 1 cut(s) 305
AgsI TTSAA 2 cut(s) 82, 106
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 2 cut(s) 176, 226
AluI AGCT 2 cut(s) 176, 226
Alw21I GWGCWC 2 cut(s) 127, 166
Alw26I GTCTC 1 cut(s) 354
Alw44I GTGCAC 2 cut(s) 123, 162
AlwI GGATC 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 38
ApaLI GTGCAC 2 cut(s) 123, 162
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 2 cut(s) 50, 100
AspLEI GCGC 2 cut(s) 39, 187
BaeGI GKGCMC 2 cut(s) 127, 166
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
Bbv12I GWGCWC 2 cut(s) 127, 166
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 249
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 40
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 5 cut(s) 135, 136, 166, 273, 318
Bse1I ACTGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 5 cut(s) 135, 136, 166, 273, 318
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 2 cut(s) 127, 166
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 215
BsiHKAI GWGCWC 2 cut(s) 127, 166
BslI CCNNNNNNNGG 5 cut(s) 135, 136, 166, 273, 318
BsmAI GTCTC 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 127, 166
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 2 cut(s) 136, 346
BspPI GGATC 1 cut(s) 16
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 156, 161, 341
BstBAI YACGTR 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 227
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 40
BstHHI GCGC 2 cut(s) 39, 187
BstKTI GATC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 2 cut(s) 309, 327
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 2 cut(s) 127, 166
BstSNI TACGTA 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 235
BtgI CCRYGG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 3 cut(s) 18, 164, 337
CfoI GCGC 2 cut(s) 39, 187
Csp6I GTAC 4 cut(s) 148, 152, 157, 295
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 2 cut(s) 306, 324
CviJI RGCY 3 cut(s) 176, 226, 374
CviKI_1 RGCY 3 cut(s) 176, 226, 374
CviQI GTAC 4 cut(s) 148, 152, 157, 295
DdeI CTNAG 1 cut(s) 227
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eco105I TACGTA 1 cut(s) 151
Eco47III AGCGCT 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 2 cut(s) 309, 327
FatI CATG 2 cut(s) 305, 323
FauI CCCGC 1 cut(s) 129
FauNDI CATATG 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 224
GlaI GCGC 2 cut(s) 38, 186
GluI GCNGC 1 cut(s) 224
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 40
HhaI GCGC 2 cut(s) 39, 187
Hin1II CATG 2 cut(s) 309, 327
Hin6I GCGC 2 cut(s) 37, 185
HinP1I GCGC 2 cut(s) 37, 185
HinfI GANTC 1 cut(s) 170
Hpy166II GTNNAC 3 cut(s) 125, 148, 164
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 3 cut(s) 125, 148, 164
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 3 cut(s) 156, 161, 341
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 114, 125, 164, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 309, 327
HspAI GCGC 2 cut(s) 37, 185
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 4 cut(s) 152, 201, 339, 366
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 1 cut(s) 196
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 233, 247
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 127, 166
MluCI AATT 5 cut(s) 30, 50, 93, 100, 328
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 2 cut(s) 52, 285
MslI CAYNNNNRTG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeI CATATG 1 cut(s) 269
NdeII GATC 1 cut(s) 8
NlaIII CATG 2 cut(s) 309, 327
NmuCI GTSAC 2 cut(s) 233, 247
NspI RCATGY 2 cut(s) 309, 327
PciI ACATGT 1 cut(s) 305
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 151
PscI ACATGT 1 cut(s) 305
PsiI TTATAA 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 352
RsaI GTAC 4 cut(s) 149, 153, 158, 296
RsaNI GTAC 4 cut(s) 148, 152, 157, 295
RseI CAYNNNNRTG 1 cut(s) 245
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 8
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 127, 166
SetI ASST 7 cut(s) 17, 111, 153, 178, 228, 264, 296
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 245
SnaBI TACGTA 1 cut(s) 151
Sse9I AATT 5 cut(s) 30, 50, 93, 100, 328
SsiI CCGC 2 cut(s) 136, 346
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 3 cut(s) 156, 161, 341
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 290
TasI AATT 5 cut(s) 30, 50, 93, 100, 328
TscAI CASTG 3 cut(s) 25, 171, 344
TseFI GTSAC 2 cut(s) 233, 247
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 2 cut(s) 233, 247
TspDTI ATGAA 4 cut(s) 39, 56, 229, 381
TspRI CASTG 3 cut(s) 25, 171, 344
VneI GTGCAC 2 cut(s) 123, 162
XapI RAATTY 2 cut(s) 50, 100
XceI RCATGY 2 cut(s) 309, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.