Rroxscaffold_7G00180970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010626
Physical Location & Seq
Forward (+)
20268395 .. 20268799
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180970.1

Sequence Viewer

Length: 321 bp
ATGTCATCATCTTCAAGAATCCTTGTTTGCTTGTTCTTGGTGTTGCTCACTACCAGTCTCCAGCAAACAGAAGCAACCTTTGAGTCTTCACCGAGTGTTGACGAAGGACCTTGGGGTAAAGATGCGACCCTGGTCCATGCCAAACCAAATGTTGCCTGTGCACTGTGGTTCGGTCAAGGCCAGTCTGTGGAAAATGCTGTCCAGCAGACGATGAGACACAACCAGGAGGATTACCGTTCTCTCCCAAGGCTGCTCCCATCAAACTTGATGTCTGAAATAATGAAAGGATTTTGTTTCGCAAGTCATGCTAGCTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.69

Weight (kDa)

5.82

Isoelectric Point (pI)

71.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AdeI CACNNNGTG 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 1 cut(s) 15
AjnI CCWGG 2 cut(s) 129, 222
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 62, 208
Alw44I GTGCAC 1 cut(s) 159
AoxI GGCC 1 cut(s) 178
ApaLI GTGCAC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 250
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspS9I GGNCC 2 cut(s) 107, 133
AsuHPI GGTGA 1 cut(s) 81
AsuNHI GCTAGC 1 cut(s) 308
AvaII GGWCC 2 cut(s) 107, 133
BaeGI GKGCMC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 265
BciT130I CCWGG 2 cut(s) 131, 224
BcoDI GTCTC 2 cut(s) 62, 208
BfaI CTAG 1 cut(s) 309
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 2 cut(s) 131, 224
Bme18I GGWCC 2 cut(s) 107, 133
BmgT120I GGNCC 2 cut(s) 107, 133
BmrFI CCNGG 2 cut(s) 131, 224
BmsI GCATC 1 cut(s) 112
BmtI GCTAGC 1 cut(s) 312
BoxI GACNNNNGTC 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 110, 129, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 54, 181
BseBI CCWGG 2 cut(s) 131, 224
BseDI CCNNGG 3 cut(s) 110, 129, 245
BseLI CCNNNNNNNGG 1 cut(s) 187
BseNI ACTGG 2 cut(s) 54, 181
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 62, 208
BsnI GGCC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 163
BspANI GGCC 1 cut(s) 180
BspOI GCTAGC 1 cut(s) 312
BsrI ACTGG 2 cut(s) 54, 181
BssECI CCNNGG 3 cut(s) 110, 129, 245
BssT1I CCWWGG 2 cut(s) 110, 245
Bst2UI CCWGG 2 cut(s) 131, 224
Bst4CI ACNGT 2 cut(s) 165, 236
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 62, 208
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 2 cut(s) 131, 224
BstPAI GACNNNNGTC 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 129, 222
BstSLI GKGCMC 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 107, 133
CviAII CATG 2 cut(s) 137, 305
CviJI RGCY 3 cut(s) 180, 250, 312
CviKI_1 RGCY 3 cut(s) 180, 250, 312
DraIII CACNNNGTG 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 110, 245
Eco47I GGWCC 2 cut(s) 107, 133
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 129, 222
EcoT14I CCWWGG 2 cut(s) 110, 245
ErhI CCWWGG 2 cut(s) 110, 245
FaeI CATG 2 cut(s) 140, 308
FaiI YATR 2 cut(s) 138, 306
FatI CATG 2 cut(s) 136, 304
Fnu4HI GCNGC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 309
GluI GCNGC 1 cut(s) 251
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 180
Hin1II CATG 2 cut(s) 140, 308
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 2 cut(s) 18, 83
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 2 cut(s) 100, 161
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 2 cut(s) 100, 161
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 165, 236
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
Hsp92II CATG 2 cut(s) 140, 308
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 9 cut(s) 67, 74, 116, 143, 169, 194, 209, 215, 236
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 309
MboII GAAGA 2 cut(s) 3, 78
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 1 cut(s) 220
MseI TTAA 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 131, 224
MvaI CCWGG 2 cut(s) 131, 224
MwoI GCNNNNNNNGC 1 cut(s) 305
NheI GCTAGC 1 cut(s) 308
NlaIII CATG 2 cut(s) 140, 308
PfeI GAWTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 1 cut(s) 252
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 107
PshAI GACNNNNGTC 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 129, 222
PspGI CCWGG 2 cut(s) 129, 222
PspPI GGNCC 2 cut(s) 107, 133
PspPPI RGGWCCY 1 cut(s) 107
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 1 cut(s) 251
Sau96I GGNCC 2 cut(s) 107, 133
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 131, 224
SduI GDGCHC 1 cut(s) 163
SetI ASST 3 cut(s) 80, 112, 314
SfaNI GCATC 1 cut(s) 112
SinI GGWCC 2 cut(s) 107, 133
Sse9I AATT 1 cut(s) 315
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 129, 222
StyI CCWWGG 2 cut(s) 110, 245
TaaI ACNGT 2 cut(s) 165, 236
TaqII GACCGA 1 cut(s) 161
TasI AATT 1 cut(s) 315
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 296
TspRI CASTG 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 187
VneI GTGCAC 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 107, 133
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.