Rh5DG181900

Toll - interleukin 1 - resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010626
Physical Location & Seq
Reverse (-)
20163608 .. 20164123
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG181900.1

Sequence Viewer

Length: 318 bp
ATGGACAAGGTGCTCAGGTGGAGACATGCTTTGACAACAGCAGCCAATATATCTGGGTTTGATTCCGAAAAAATTAGACCCGATTCGGATTTAGTTAAGAGGGTGGTCAATGACATTTTGGTGAAATTGGATGGCAAATCGCAAAACGCAGGTGGTTTGGAGCGCTGGGTTGGAATGGACAAACACATAATTCAACTTGTTGAGTTATTATGCCTCAACTCACGGGACGTCCACATTGTAGGCATTTGGGGGAAGCATCAGAGACGAAACATGGACTACTATATGATTTGCGAAATGATCTTTTTCGTACTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.25

Weight (kDa)

8.64

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 3 - 49 6.8e-07 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 140
AatII GACGTC 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 1 cut(s) 309
AfeI AGCGCT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 2 cut(s) 16, 256
Aor51HI AGCGCT 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 16, 256
BfoI RGCGCY 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmsI GCATC 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 228
BseGI GGATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 15
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 16, 256
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 27
BspMI ACCTGC 1 cut(s) 140
BssMI GATC 1 cut(s) 297
BssNI GRCGYC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 16, 256
BstMBI GATC 1 cut(s) 297
BstNSI RCATGY 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 140
CfoI GCGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 308
CviAII CATG 2 cut(s) 26, 271
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
Eco47III AGCGCT 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 2 cut(s) 29, 274
FaiI YATR 7 cut(s) 27, 50, 188, 211, 272, 282, 284
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 25, 270
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 42
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 166
HhaI GCGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 29, 274
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 2 cut(s) 62, 83
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 67, 88, 261
Hpy8I GTNNAC 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 29, 274
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 3 cut(s) 39, 135, 151
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 265
MaeII ACGT 1 cut(s) 228
MalI GATC 1 cut(s) 299
MboI GATC 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 3 cut(s) 72, 125, 189
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 2 cut(s) 93, 224
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 119
NdeII GATC 1 cut(s) 297
NlaIII CATG 2 cut(s) 29, 274
NspI RCATGY 1 cut(s) 29
PaqCI CACCTGC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 62, 83
PkrI GCNGC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 165
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 297
SduI GDGCHC 1 cut(s) 15
SetI ASST 4 cut(s) 12, 20, 154, 231
SfaNI GCATC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 3 cut(s) 72, 125, 189
TaiI ACGT 1 cut(s) 231
TasI AATT 3 cut(s) 72, 125, 189
TfiI GAWTC 2 cut(s) 62, 83
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 1 cut(s) 41
XceI RCATGY 1 cut(s) 29
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.