Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010626

Physical Location & Seq

Genomic Coordinates Reverse (-)

49716562 .. 49776869

Gene Structure 60308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG313200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGTGCGCCAGTGGAGGGATGCTTTGACAAGTGCTGCAAATCTATCTGGGTTTGATTCTCACAAAATAAGGCCTGAGTCCAAGTTAGTTGAGGATATTGTTAAAGCTATTTTAGTGAAATTGAATGGTGGATCATCTAGTGTTTTGAAGGGCCTGGTAGGGATGAAAAGCCGCGTTCGGGAAGTTGAAAGATGTATATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

67

Amino Acids

7.39

Weight (kDa)

10.01

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	2 - 53	5.6e-08	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010626)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0266321 RchiOBHm_Chr6g0287401
rosa_laevigata	RLG00000012482
rosa_roxburghii	Rroxscaffold_7G00180970
rosa_rugosa	Rorug06G0188100 Rorug06G0189500
rosa_samantha	Rh1BG003600 Rh5DG181900 Rh6AG299100 Rh6BG305800 Rh6BG305900 Rh6CG303300 Rh6CG303500 Rh6CG303700 Rh6CG304900 Rh6CG305000 Rh6CG313200 Rh6CG314300 Rh6CG314500 Rh6DG296500 Rh6DG297700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	202
AccII	CGCG	1 cut(s)	174
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	16, 178
AgsI	TTSAA	3 cut(s)	124, 148, 188
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	2 cut(s)	71, 151
ApeKI	GCWGC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	155
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	2 cut(s)	36, 172
BlsI	GCNGC	2 cut(s)	37, 173
Bme1390I	CCNGG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 178
Bse1I	ACTGG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	25, 168
BseLI	CCNNNNNNNGG	2 cut(s)	16, 178
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	73, 153
BslI	CCNNNNNNNGG	2 cut(s)	16, 178
BsnI	GGCC	2 cut(s)	73, 153
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	2 cut(s)	73, 153
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	10
BssMI	GATC	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	25, 168
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	73, 153
BtsCI	GGATG	2 cut(s)	25, 168
BtsIMutI	CAGTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	151
CviJI	RGCY	4 cut(s)	73, 107, 153, 171
CviKI_1	RGCY	4 cut(s)	73, 107, 153, 171
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eco147I	AGGCCT	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	153
FaiI	YATR	2 cut(s)	197, 202
Fnu4HI	GCNGC	2 cut(s)	36, 172
FokI	GGATG	2 cut(s)	32, 175
Fsp4HI	GCNGC	2 cut(s)	36, 172
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	36, 172
HaeIII	GGCC	2 cut(s)	73, 153
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	56, 77
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	75
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	131
LpnPI	CCDG	5 cut(s)	23, 33, 87, 140, 167
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	138
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	2 cut(s)	9, 85
MseI	TTAA	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	174
NdeII	GATC	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	37, 173
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	36, 172
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	10
Sse9I	AATT	1 cut(s)	119
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	153
TasI	AATT	1 cut(s)	119
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	17
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	17
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.