Rh6CG303300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010626
Physical Location & Seq
Reverse (-)
48377713 .. 48378073
361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG303300.1

Sequence Viewer

Length: 270 bp
ATGTCATCATCTTCAAGAATCCTTCTTTGCTTGTTCCTAGTGTTGCTCACTACCAGTCTCCAGCACAGAGAAGCAACCTTTGAGTCTTCACCGAGTGTTGATGAAGGACCTTGGGGATGCGACCCTGGTCCATGCCAAACCAAATGTTGCCTGTGCACTGTGGTTCGGTCAAGGCCAGTCTGTGGAAAATGCTGCCCAGCAGATGATGAGACACAACCAGCAGGATTACTGTTCTCTCCCAAGGCTGCTCCCATCCAACTTGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.51

Weight (kDa)

5.12

Isoelectric Point (pI)

71.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 1 cut(s) 15
AjnI CCWGG 1 cut(s) 124
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 2 cut(s) 62, 203
Alw44I GTGCAC 1 cut(s) 154
AoxI GGCC 1 cut(s) 173
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 192, 245
AspS9I GGNCC 2 cut(s) 107, 128
AsuHPI GGTGA 1 cut(s) 81
AvaII GGWCC 2 cut(s) 107, 128
BaeGI GKGCMC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 179, 232
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 62, 203
BfaI CTAG 1 cut(s) 38
BisI GCNGC 2 cut(s) 193, 246
BlsI GCNGC 2 cut(s) 194, 247
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 107, 128
BmgT120I GGNCC 2 cut(s) 107, 128
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 107
BoxI GACNNNNGTC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 110, 124, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 54, 176
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 110, 124, 240
BseGI GGATG 2 cut(s) 122, 252
BseLI CCNNNNNNNGG 1 cut(s) 182
BseNI ACTGG 2 cut(s) 54, 176
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 2 cut(s) 179, 232
BseYI CCCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 2 cut(s) 62, 203
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 158
BspANI GGCC 1 cut(s) 175
BsrI ACTGG 2 cut(s) 54, 176
BssECI CCNNGG 3 cut(s) 110, 124, 240
BssT1I CCWWGG 2 cut(s) 110, 240
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 160, 231
BstF5I GGATG 2 cut(s) 122, 252
BstMAI GTCTC 2 cut(s) 62, 203
BstNI CCWGG 1 cut(s) 126
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 179, 232
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 2 cut(s) 122, 252
BtsIMutI CAGTG 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 107, 128
CviAII CATG 1 cut(s) 132
CviJI RGCY 2 cut(s) 175, 245
CviKI_1 RGCY 2 cut(s) 175, 245
DraIII CACNNNGTG 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 110, 240
Eco47I GGWCC 2 cut(s) 107, 128
EcoO109I RGGNCCY 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 110, 240
ErhI CCWWGG 2 cut(s) 110, 240
FaeI CATG 1 cut(s) 135
FaiI YATR 1 cut(s) 133
FatI CATG 1 cut(s) 131
Fnu4HI GCNGC 2 cut(s) 193, 246
FokI GGATG 2 cut(s) 129, 239
Fsp4HI GCNGC 2 cut(s) 193, 246
FspBI CTAG 1 cut(s) 38
GluI GCNGC 2 cut(s) 193, 246
GsaI CCCAGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 1 cut(s) 135
HinfI GANTC 2 cut(s) 18, 83
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 32, 98
HpyCH4III ACNGT 2 cut(s) 160, 231
HpyCH4V TGCA 1 cut(s) 156
Hsp92II CATG 1 cut(s) 135
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 9 cut(s) 67, 74, 111, 138, 164, 189, 207, 210, 231
Lsp1109I GCAGC 2 cut(s) 179, 232
LweI GCATC 1 cut(s) 107
MaeI CTAG 1 cut(s) 38
MboII GAAGA 2 cut(s) 3, 78
MhlI GDGCHC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
NlaIII CATG 1 cut(s) 135
PfeI GAWTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 2 cut(s) 194, 247
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 107
PshAI GACNNNNGTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 1 cut(s) 124
PspPI GGNCC 2 cut(s) 107, 128
PspPPI RGGWCCY 1 cut(s) 107
SatI GCNGC 2 cut(s) 193, 246
Sau96I GGNCC 2 cut(s) 107, 128
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 158
SetI ASST 2 cut(s) 80, 112
SfaNI GCATC 1 cut(s) 107
SinI GGWCC 2 cut(s) 107, 128
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 2 cut(s) 110, 240
TaaI ACNGT 2 cut(s) 160, 231
TaqII GACCGA 1 cut(s) 156
TfiI GAWTC 1 cut(s) 18
TscAI CASTG 1 cut(s) 163
TseI GCWGC 2 cut(s) 192, 245
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 163
Van91I CCANNNNNTGG 1 cut(s) 182
VneI GTGCAC 1 cut(s) 154
VpaK11BI GGWCC 2 cut(s) 107, 128
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.