RLG00000012482

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010626
Physical Location & Seq
Reverse (-)
19176576 .. 19178438
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012482

Sequence Viewer

Length: 381 bp
ATGCCTTTATTTAATATCTCGGAAAGCTCATTTCAAATATTCATCCTGGACTGCACAAGGAAGGTAAGAAAAGATTATCCAGTGAAGCTGCAACAGCTACAAATTGGAATAGCAGGTAAGAATCAGATGCGAAGAGCTGTCACGGCTCAAGATACCTCAATTAATTGTCTCCAGCACACAGAAGCAACCTTTGAGTCTTCACCGAGTGTTGACGAAGGACCTTGGGGATGCGACCCTGGTCCATGCCAAACCAAATGTTGCCTGTGCACTGTGGTTCTGTCAAGGCCAGTCTGTGGAAAATGCTGTCCAGCAGATGATGAGACACAACCAGGAGGATTACCGTTCTCTCCCAAGGCTGCTCCCATCAAACTTGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.72

Weight (kDa)

6.53

Isoelectric Point (pI)

65.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 293
AdeI CACNNNGTG 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 1 cut(s) 35
AjnI CCWGG 3 cut(s) 45, 235, 328
AluBI AGCT 4 cut(s) 27, 88, 97, 137
AluI AGCT 4 cut(s) 27, 88, 97, 137
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 2 cut(s) 173, 314
Alw44I GTGCAC 1 cut(s) 265
AoxI GGCC 1 cut(s) 284
ApaLI GTGCAC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 88, 356
ArsI GACNNNNNNTTYG 1 cut(s) 360
AseI ATTAAT 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 218, 239
AsuHPI GGTGA 1 cut(s) 192
AvaII GGWCC 2 cut(s) 218, 239
BaeGI GKGCMC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 2 cut(s) 75, 343
BccI CCATC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 3 cut(s) 47, 237, 330
BcoDI GTCTC 2 cut(s) 173, 314
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 2 cut(s) 89, 357
BlsI GCNGC 2 cut(s) 90, 358
Bme1390I CCNGG 3 cut(s) 47, 237, 330
Bme18I GGWCC 2 cut(s) 218, 239
BmgT120I GGNCC 2 cut(s) 218, 239
BmrFI CCNGG 3 cut(s) 47, 237, 330
BmsI GCATC 2 cut(s) 117, 218
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 221, 235, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 80, 287
BseBI CCWGG 3 cut(s) 47, 237, 330
BseDI CCNNGG 3 cut(s) 221, 235, 351
BseGI GGATG 2 cut(s) 42, 233
BseLI CCNNNNNNNGG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 80, 287
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 2 cut(s) 75, 343
BsgI GTGCAG 1 cut(s) 37
BshFI GGCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 173, 314
BsnI GGCC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 269
BspANI GGCC 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 104
BspQI GCTCTTC 1 cut(s) 127
BsrI ACTGG 2 cut(s) 80, 287
BssECI CCNNGG 3 cut(s) 221, 235, 351
BssT1I CCWWGG 2 cut(s) 221, 351
Bst2UI CCWGG 3 cut(s) 47, 237, 330
Bst4CI ACNGT 2 cut(s) 271, 342
Bst6I CTCTTC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 42, 233
BstMAI GTCTC 2 cut(s) 173, 314
BstMWI GCNNNNNNNGC 2 cut(s) 94, 143
BstNI CCWGG 3 cut(s) 47, 237, 330
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 3 cut(s) 45, 235, 328
BstSLI GKGCMC 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 75, 343
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 286
BtsCI GGATG 2 cut(s) 42, 233
BtsIMutI CAGTG 2 cut(s) 87, 267
BveI ACCTGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 218, 239
CviAII CATG 1 cut(s) 243
CviJI RGCY 7 cut(s) 27, 88, 97, 137, 146, 286, 356
CviKI_1 RGCY 7 cut(s) 27, 88, 97, 137, 146, 286, 356
DraIII CACNNNGTG 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco130I CCWWGG 2 cut(s) 221, 351
Eco47I GGWCC 2 cut(s) 218, 239
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 45, 235, 328
EcoT14I CCWWGG 2 cut(s) 221, 351
ErhI CCWWGG 2 cut(s) 221, 351
FaeI CATG 1 cut(s) 246
FaiI YATR 1 cut(s) 244
FatI CATG 1 cut(s) 242
Fnu4HI GCNGC 2 cut(s) 89, 357
FokI GGATG 2 cut(s) 29, 240
Fsp4HI GCNGC 2 cut(s) 89, 357
GluI GCNGC 2 cut(s) 89, 357
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 286
Hin1II CATG 1 cut(s) 246
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 2 cut(s) 121, 194
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 2 cut(s) 211, 267
Hpy188I TCNGA 3 cut(s) 22, 126, 380
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 2 cut(s) 211, 267
HpyAV CCTTC 2 cut(s) 55, 209
HpyCH4III ACNGT 2 cut(s) 271, 342
HpyCH4V TGCA 3 cut(s) 54, 91, 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 143
Hsp92II CATG 1 cut(s) 246
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 2 cut(s) 75, 343
LweI GCATC 2 cut(s) 117, 218
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 2 cut(s) 144, 189
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 3 cut(s) 102, 159, 163
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 2 cut(s) 166, 326
MseI TTAA 2 cut(s) 12, 162
MspR9I CCNGG 3 cut(s) 47, 237, 330
MvaI CCWGG 3 cut(s) 47, 237, 330
MwoI GCNNNNNNNGC 2 cut(s) 94, 143
NlaIII CATG 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 293
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 2 cut(s) 90, 358
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 218
PshAI GACNNNNGTC 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 3 cut(s) 45, 235, 328
PspGI CCWGG 3 cut(s) 45, 235, 328
PspPI GGNCC 2 cut(s) 218, 239
PspPPI RGGWCCY 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 12, 162
SatI GCNGC 2 cut(s) 89, 357
Sau96I GGNCC 2 cut(s) 218, 239
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 3 cut(s) 47, 237, 330
SduI GDGCHC 1 cut(s) 269
SetI ASST 9 cut(s) 29, 66, 90, 99, 118, 139, 158, 191, 223
SfaNI GCATC 2 cut(s) 117, 218
SinI GGWCC 2 cut(s) 218, 239
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 3 cut(s) 102, 159, 163
SspI AATATT 1 cut(s) 39
StyD4I CCNGG 3 cut(s) 45, 235, 328
StyI CCWWGG 2 cut(s) 221, 351
TaaI ACNGT 2 cut(s) 271, 342
TasI AATT 3 cut(s) 102, 159, 163
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 12, 162
Tru9I TTAA 2 cut(s) 12, 162
TscAI CASTG 2 cut(s) 87, 274
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 2 cut(s) 88, 356
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 31
TspRI CASTG 2 cut(s) 87, 274
Van91I CCANNNNNTGG 1 cut(s) 293
VneI GTGCAC 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 218, 239
VspI ATTAAT 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.