Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010626

Physical Location & Seq

Genomic Coordinates Reverse (-)

48381190 .. 48384324

Gene Structure 3135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG303500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGCGCCGGTGGAGGGATGCTTTGACAACTGCTGCAAATCTATCTGGGTTTGATTCTCAAAATATAAGGCCTGAGTCCAAGTTAGTTGAGGATATTGTTAGAGCTATTTTAGTGAAATTGAATCGTGGATCATCCAGTGTTTTGAAGGGCCTGTTGGAGCGAAAGAACTTACGTCTGGATTGGCTCTTGAACTTAGGTCGTCTGGAGTATCTAAGTCGTCTGGATTGGACCTTGAACTTAGGTCGTCTGCATCGAAGTTTTGCTCTTGAACTTACATTGAAGTTTCTCCCCTCTCTTGAACTTCAAGAAGTTACGTCGTTGTCGTCCAGTACATCAAAGTCTCTCTCCTTCAAGAAGTTACGTCATCCGTCGTCGTGTTGGAAGTCTCTGTTACGTCATCCGTCGTCGTGTTGGAAGTCTCTCTCCTCTCTTAAACTTCAAGAAGAAGTATTTCAAGAAGCCTGCAAGAAGTTAAATCTTAAACTTCAAGAAGAATTTCAAGAAGCCTGCAAGAAGTTACATCTTAAACTTCAAGAAGTTAAAGCATCGAAGGAAGTTCAAGAAGCACTTGAACGTCTTCAGAAGTTTCAACGTAGACTTGAAGTTGAACTTAAAGACGCACTTGAAGCCTCCCAGAAGTTTCATCGTAGACTTGAAGCCTCCCAGAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

225

Amino Acids

26.19

Weight (kDa)

9.88

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	2 - 47	1.9e-06	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010626)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0266321 RchiOBHm_Chr6g0287401
rosa_laevigata	RLG00000012482
rosa_roxburghii	Rroxscaffold_7G00180970
rosa_rugosa	Rorug06G0188100 Rorug06G0189500
rosa_samantha	Rh1BG003600 Rh5DG181900 Rh6AG299100 Rh6BG305800 Rh6BG305900 Rh6CG303300 Rh6CG303500 Rh6CG303700 Rh6CG304900 Rh6CG305000 Rh6CG313200 Rh6CG314300 Rh6CG314500 Rh6DG296500 Rh6DG297700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	598, 652
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw26I	GTCTC	3 cut(s)	348, 393, 426
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	2 cut(s)	71, 151
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	497
Asp700I	GAANNNNTTC	3 cut(s)	453, 498, 579
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	151, 231
AvaII	GGWCC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	572
BbvI	GCAGC	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	348, 393, 426
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	151, 231
BmsI	GCATC	3 cut(s)	10, 262, 557
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	2 cut(s)	138, 330
BseGI	GGATG	4 cut(s)	25, 134, 367, 400
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	138, 330
BseRI	GAGGAG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	2 cut(s)	73, 153
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	3 cut(s)	348, 393, 426
BsnI	GGCC	2 cut(s)	73, 153
Bsp143I	GATC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	73, 153
BspCNI	CTCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	9
BsrI	ACTGG	2 cut(s)	138, 330
BssAI	RCCGGY	1 cut(s)	9
BssMI	GATC	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	466, 511
BstDEI	CTNAG	4 cut(s)	75, 196, 215, 241
BstF5I	GGATG	4 cut(s)	25, 134, 367, 400
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	3 cut(s)	348, 393, 426
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	73, 153
BtsCI	GGATG	4 cut(s)	25, 134, 367, 400
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	466, 511
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	151, 231
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	333
CviJI	RGCY	8 cut(s)	73, 107, 153, 187, 464, 509, 632, 662
CviKI_1	RGCY	8 cut(s)	73, 107, 153, 187, 464, 509, 632, 662
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	4 cut(s)	75, 196, 215, 241
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eco147I	AGGCCT	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	151
FaiI	YATR	1 cut(s)	68
FalI	AAGNNNNNCTT	6 cut(s)	555, 587, 597, 629, 609, 641
FblI	GTMKAC	2 cut(s)	598, 652
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	4 cut(s)	32, 121, 354, 387
Fsp4HI	GCNGC	1 cut(s)	36
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	73, 153
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	3 cut(s)	56, 77, 124
HpaII	CCGG	1 cut(s)	10
Hpy166II	GTNNAC	2 cut(s)	599, 653
Hpy188I	TCNGA	1 cut(s)	585
Hpy8I	GTNNAC	2 cut(s)	599, 653
Hpy99I	CGWCG	5 cut(s)	322, 376, 379, 409, 412
HpyAV	CCTTC	3 cut(s)	142, 361, 547
HpyCH4IV	ACGT	6 cut(s)	175, 317, 364, 397, 577, 595
HpyCH4V	TGCA	4 cut(s)	38, 253, 468, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	4 cut(s)	75, 196, 215, 241
HpySE526I	ACGT	6 cut(s)	175, 317, 364, 397, 577, 595
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	3 cut(s)	10, 262, 557
MaeII	ACGT	6 cut(s)	175, 317, 364, 397, 577, 595
MaeIII	GTNAC	4 cut(s)	313, 360, 393, 519
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	3 cut(s)	458, 506, 572
MluCI	AATT	2 cut(s)	119, 497
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	3 cut(s)	138, 362, 395
MnlI	CCTC	6 cut(s)	9, 85, 304, 439, 643, 673
MroXI	GAANNNNTTC	3 cut(s)	453, 498, 579
MseI	TTAA	6 cut(s)	435, 476, 483, 528, 543, 615
MspI	CCGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	253, 323
PdmI	GAANNNNTTC	3 cut(s)	453, 498, 579
PfeI	GAWTC	2 cut(s)	56, 124
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	151, 231
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	6 cut(s)	435, 476, 483, 528, 543, 615
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	2 cut(s)	151, 231
SchI	GAGTC	1 cut(s)	86
SfaNI	GCATC	3 cut(s)	10, 262, 557
SgrAI	CRCCGGYG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	2 cut(s)	119, 497
SseBI	AGGCCT	1 cut(s)	73
StuI	AGGCCT	1 cut(s)	73
TaiI	ACGT	6 cut(s)	178, 320, 367, 400, 580, 598
TaqI	TCGA	2 cut(s)	256, 551
TasI	AATT	2 cut(s)	119, 497
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	56, 124
Tru1I	TTAA	6 cut(s)	435, 476, 483, 528, 543, 615
Tru9I	TTAA	6 cut(s)	435, 476, 483, 528, 543, 615
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	635
TspGWI	ACGGA	2 cut(s)	360, 393
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	497
XmiI	GTMKAC	2 cut(s)	598, 652
XmnI	GAANNNNTTC	3 cut(s)	453, 498, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.