RchiOBHm_Chr6g0277301

Belongs to the universal ribosomal protein uL11 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
39771559 .. 39772710
1152 bp
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UTR
Exon/CDS
Intron
PRQ24876

Sequence Viewer

Length: 189 bp
ATGGCAACCCTTGAGGAAATCCTAACACGCCGCCTTGTCGCTGCGGCAATCCACCTCCCTCGACCCGCCTCACCCGACACGCACCGCCGGTGTCCTGCTTTAGGTCAGTCTCGCCTCAACCTAATGGCCTTCTGCAAAGACTTCAATGCCCAACGCAGAAGCACAAACCCGATACTCCCATGGCAGTGA

Protein Analysis

62

Amino Acids

7.05

Weight (kDa)

11.19

Isoelectric Point (pI)

91.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 31, 44, 66, 85
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 114
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 63
BbvI GCAGC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 114
BisI GCNGC 3 cut(s) 31, 42, 45
BlsI GCNGC 3 cut(s) 32, 43, 46
BpuEI CTTGAG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 114
BsnI GGCC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 4 cut(s) 31, 44, 66, 85
BspANI GGCC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 179
BstENI CCTNNNNNAGG 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 87
CviAII CATG 1 cut(s) 180
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 1 cut(s) 183
FaiI YATR 1 cut(s) 181
FatI CATG 1 cut(s) 179
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 31, 42, 45
Fsp4HI GCNGC 3 cut(s) 31, 42, 45
GluI GCNGC 3 cut(s) 31, 42, 45
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 88
Hin1II CATG 1 cut(s) 183
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 135
Hsp92II CATG 1 cut(s) 183
LpnPI CCDG 2 cut(s) 101, 108
Lsp1109I GCAGC 1 cut(s) 28
MnlI CCTC 5 cut(s) 7, 65, 69, 79, 125
MslI CAYNNNNRTG 1 cut(s) 184
MspI CCGG 1 cut(s) 88
NcoI CCATGG 1 cut(s) 179
NlaIII CATG 1 cut(s) 183
PkrI GCNGC 3 cut(s) 32, 43, 46
RseI CAYNNNNRTG 1 cut(s) 184
SatI GCNGC 3 cut(s) 31, 42, 45
SetI ASST 3 cut(s) 57, 106, 123
SgrAI CRCCGGYG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SsiI CCGC 4 cut(s) 31, 44, 66, 85
StyI CCWWGG 1 cut(s) 179
TaqI TCGA 1 cut(s) 61
TauI GCSGC 2 cut(s) 33, 47
TseI GCWGC 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.