Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

6575839 .. 6578610

Gene Structure 2772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG084400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTAAGTTCTGGACCTCCCTACTTTGAACTCAAATTTGAAAAGCTTTGCGAAGATTGGGTGTTGAGAGCTGAACTGGAAGAGCTTAAGCAGGACATTGCGAATGCTAATAAGCAGCAAAGTTTAAGTTATAAAGCACCTGGGAATAAGGAAAAATCACTTGCTGATGTGCAGGTTCAAATTGATCAGCTTAGAGCTAATGAGAAGGATCTTCTCTCAAGATTTAACCCTGAAATAGCAGATCTTAAAGAGAAGCTTATTACATGCAAGGCGGATCGAACTGAGACTGAAGCAACAAAGGCAGAGCTTGAGACTAATTTAACTACAACCCTTAAGAGGCGAAAGCAAGAACTAGAGGCAATAATATCTTCTGTGGAAACTGATAGTTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCAACAGAGCAGCTCAGAAGAGTTTCTGAAAGTATTAATGGTCAGTCGAGGCAATTGAGGAAAACTAAGGATGAAAAGACTAAGTTGAAGAACTTGGAAGACAACTATGAGAGGACACTTCAGGATGAAGCTAAACAGCTGGAGCAGCTGGTCATTCCGAGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

198

Amino Acids

22.82

Weight (kDa)

5.01

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp58	PF07902	22 - 191	2.6e-06	gp58-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	163
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	216, 282
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	309, 533
AfiI	CCNNNNNNNGG	1 cut(s)	336
AflII	CTTAAG	2 cut(s)	86, 332
AgsI	TTSAA	4 cut(s)	29, 41, 179, 517
AjnI	CCWGG	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	278, 305
AlwI	GGATC	2 cut(s)	216, 282
AlwNI	CAGNNNCTG	1 cut(s)	421
ApeKI	GCWGC	3 cut(s)	115, 439, 574
ApoI	RAATTY	1 cut(s)	35
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	127, 451, 586
BciT130I	CCWGG	1 cut(s)	141
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	278, 305
BfaI	CTAG	1 cut(s)	353
BfrI	CTTAAG	2 cut(s)	86, 332
BfuAI	ACCTGC	1 cut(s)	163
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	3 cut(s)	116, 440, 575
BlsI	GCNGC	3 cut(s)	117, 441, 576
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	590
BpuEI	CTTGAG	2 cut(s)	202, 329
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	505, 559
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	273, 457
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	127, 451, 586
BsgI	GTGCAG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	278, 305
BsmI	GAATGC	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	184, 208, 241, 274
BspACI	CCGC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	274, 456
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	216, 282
BspQI	GCTCTTC	1 cut(s)	75
BspTI	CTTAAG	2 cut(s)	86, 332
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	4 cut(s)	184, 208, 241, 274
Bst2UI	CCWGG	1 cut(s)	141
Bst6I	CTCTTC	2 cut(s)	75, 442
BstAFI	CTTAAG	2 cut(s)	86, 332
BstDEI	CTNAG	5 cut(s)	191, 282, 443, 495, 510
BstF5I	GGATG	2 cut(s)	505, 559
BstKTI	GATC	4 cut(s)	187, 211, 244, 277
BstMAI	GTCTC	2 cut(s)	278, 305
BstMBI	GATC	4 cut(s)	184, 208, 241, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 574
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	127, 451, 586
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	208, 241
BstYI	RGATCY	2 cut(s)	208, 241
BtsCI	GGATG	2 cut(s)	505, 559
BveI	ACCTGC	1 cut(s)	163
CaiI	CAGNNNCTG	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	2 cut(s)	264, 392
DdeI	CTNAG	5 cut(s)	191, 282, 443, 495, 510
DpnI	GATC	4 cut(s)	186, 210, 243, 276
DpnII	GATC	4 cut(s)	184, 208, 241, 274
Eam1104I	CTCTTC	2 cut(s)	75, 442
EarI	CTCTTC	2 cut(s)	75, 442
EciI	GGCGGA	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	2 cut(s)	309, 533
EcoRII	CCWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	267, 395
FaiI	YATR	4 cut(s)	132, 265, 393, 537
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	2 cut(s)	263, 391
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	116, 440, 575
FokI	GGATG	2 cut(s)	512, 566
Fsp4HI	GCNGC	3 cut(s)	116, 440, 575
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	3 cut(s)	116, 440, 575
GsuI	CTGGAG	1 cut(s)	590
Hin1II	CATG	2 cut(s)	267, 395
HindIII	AAGCTT	2 cut(s)	44, 254
HinfI	GANTC	2 cut(s)	412, 589
HphI	GGTGA	1 cut(s)	407
Hpy188I	TCNGA	3 cut(s)	446, 457, 588
Hpy188III	TCNNGA	4 cut(s)	12, 219, 416, 551
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	172, 267, 391, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 574
HpyF3I	CTNAG	5 cut(s)	191, 282, 443, 495, 510
Hsp92II	CATG	2 cut(s)	267, 395
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 208, 241, 274
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	3 cut(s)	127, 451, 586
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	353
MalI	GATC	4 cut(s)	186, 210, 243, 276
MboI	GATC	4 cut(s)	184, 208, 241, 274
MboII	GAAGA	8 cut(s)	65, 92, 203, 360, 410, 459, 529, 539
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	2 cut(s)	208, 241
MluCI	AATT	4 cut(s)	35, 180, 316, 482
MnlI	CCTC	6 cut(s)	27, 330, 349, 471, 480, 534
MroXI	GAANNNNTTC	1 cut(s)	451
MseI	TTAA	8 cut(s)	5, 87, 125, 225, 246, 320, 333, 465
MspA1I	CMGCKG	2 cut(s)	568, 577
MspCI	CTTAAG	2 cut(s)	86, 332
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	299, 574
NdeII	GATC	4 cut(s)	184, 208, 241, 274
NlaIII	CATG	2 cut(s)	267, 395
NspI	RCATGY	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	412
PkrI	GCNGC	3 cut(s)	117, 441, 576
PshBI	ATTAAT	1 cut(s)	465
PsiI	TTATAA	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	208, 241
PvuII	CAGCTG	2 cut(s)	568, 577
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	8 cut(s)	5, 87, 125, 225, 246, 320, 333, 465
SatI	GCNGC	3 cut(s)	116, 440, 575
Sau3AI	GATC	4 cut(s)	184, 208, 241, 274
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	418
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	4 cut(s)	86, 217, 308, 332
SmoI	CTYRAG	4 cut(s)	86, 217, 308, 332
Sse9I	AATT	4 cut(s)	35, 180, 316, 482
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	139
TaqI	TCGA	2 cut(s)	277, 476
TasI	AATT	4 cut(s)	35, 180, 316, 482
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	8 cut(s)	5, 87, 125, 225, 246, 320, 333, 465
Tru9I	TTAA	8 cut(s)	5, 87, 125, 225, 246, 320, 333, 465
TseI	GCWGC	3 cut(s)	115, 439, 574
TspDTI	ATGAA	3 cut(s)	417, 516, 570
Vha464I	CTTAAG	2 cut(s)	86, 332
VpaK11BI	GGWCC	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.