Rh3CG246200

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
23720371 .. 23737560
17190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG246200.1

Sequence Viewer

Length: 1302 bp
ATGATCAACAAGGAAGTTGTCTCTGCGTTGGGAAGACAGGGCGTGATTGTTAATGTAGGGTGTGGAGCCATTATTGATGAGAAGGAAATAGTGCAGTGTTTGGTGCGAGGAGAGATAGTGGATGCTGGCTCGGATGTGTTTGAGAATGAGCCTGATGTTCCTAAACAGCTCTTTGCATTGCATCATATCTTACAGATAGATGAGAAAATTACAAAACTTGTAACTGAACAGCAGAAAATTGATGCTGAGCGAGCCCATATCAAATCAGAACTGGAACGGCTTAAGCAGGACATTGCGAATGCTAATAAGCAGCAAAGTTTAAGTTATAAAGCACCTAGGAATAAGGAAAAATCACTTGCTGATGTGCGGGTTCAAATTGATCAGCTTAGAGCTACTATGGCCATGAAGCATGTTGAAATGGGTACCTATCTCATTGATCATTTGACTCCAGAGGAGAAGGATCTTCTCTCAAGATTGAACCATGAAATAGCAGATCTTAAAGAGAAGCTTATTACATGCAAGGCGGATCGAACTGAGACTGAAGCAAGAAAGGCAGAGCTTGAGACTAATTTAACTACGAACCTTAAGAGGCGAAAGCAAGAACTAGAGGCAATAATATCTTCCGTGGAAACTGATAATTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCTAGATTAGTGGTTGAAGATGCAACAGAGCAGCTCAGAAGAATTTCTGAAAGTATTGATGGTCAGTCGAGGCAATTGAGGAAAACTAAGGATGAAAAGACTAAGTTGAAGAACTTGGAAGACAACTATGAGAGGACACTTCAGAATGAAGCCAAACAACTGGAGCAGCTACTGAGTAAAAGAAATATGTATCCTGCTAAACAAGAAGAGTACTCAAATGAAGTCAGAGAACTGGGTGCATTGTCATCGGATGCTTTTGAAACAGTGGATCGAACGTCGGTGACGCGCAGCGGAGTGGATCTAATTCTCGGTGAGGCTAAGGAGACGACGGAGTGGATCGAACGCCGGAATCTGGGCAAGAACTCAATGTCGCGCCAAGTGAGGGATCAAAGAGATTTCAACACTGCGTTTCTGGAGCGCAAGGAGGCTGCGAATCGGCTTGTGGTGGAAGAAGCCATCGACTATTGCAACTCGATCTTCGTGCTTCACCCCGAGACCATGGAGAGCTCCAGCGACAACACAATCAGCCATGTTGACAGGACAAAGATCTTAGAAGCCTTCAAAACAATTCTGGACATAAATACTGTATTCTTGTCAAAGGTGTACATGGCATGCATTTGA

Protein Analysis

433

Amino Acids

49.57

Weight (kDa)

5.32

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh_C PF02826 1 - 62 1.7e-10 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 422
AccII CGCG 2 cut(s) 967, 1054
AciI CCGC 3 cut(s) 367, 524, 972
AclWI GGATC 6 cut(s) 468, 534, 957, 987, 1025, 1074
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 723
AcuI CTGAAG 2 cut(s) 561, 806
AfaI GTAC 3 cut(s) 424, 893, 1286
AfiI CCNNNNNNNGG 2 cut(s) 1033, 1063
AflII CTTAAG 2 cut(s) 281, 584
AgsI TTSAA 8 cut(s) 374, 416, 478, 698, 790, 941, 1081, 1243
AluBI AGCT 8 cut(s) 169, 385, 392, 508, 559, 715, 850, 1188
AluI AGCT 8 cut(s) 169, 385, 392, 508, 559, 715, 850, 1188
Alw21I GWGCWC 1 cut(s) 1190
Alw26I GTCTC 5 cut(s) 25, 530, 557, 998, 1169
AlwI GGATC 6 cut(s) 468, 534, 957, 987, 1025, 1074
AlwNI CAGNNNCTG 2 cut(s) 673, 853
Ama87I CYCGRG 1 cut(s) 1172
AoxI GGCC 1 cut(s) 399
ApeKI GCWGC 5 cut(s) 310, 712, 847, 969, 1109
ApoI RAATTY 1 cut(s) 723
Asp700I GAANNNNTTC 1 cut(s) 724
Asp718I GGTACC 1 cut(s) 422
AspA2I CCTAGG 1 cut(s) 335
AspLEI GCGC 3 cut(s) 969, 1056, 1101
AsuHPI GGTGA 4 cut(s) 659, 973, 1004, 1160
AvaI CYCGRG 1 cut(s) 1172
AvrII CCTAGG 1 cut(s) 335
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 2 cut(s) 256, 1190
BbsI GAAGAC 2 cut(s) 40, 807
Bbv12I GWGCWC 1 cut(s) 1190
BbvI GCAGC 5 cut(s) 322, 724, 859, 981, 1096
BccI CCATC 2 cut(s) 734, 1145
BceAI ACGGC 1 cut(s) 293
BcgI CGANNNNNNTGC 4 cut(s) 909, 943, 1144, 1178
BciVI GTATCC 1 cut(s) 882
BclI TGATCA 3 cut(s) 3, 379, 436
BcoDI GTCTC 5 cut(s) 25, 530, 557, 998, 1169
BfaI CTAG 3 cut(s) 336, 605, 684
BfrI CTTAAG 2 cut(s) 281, 584
BfuI GTATCC 1 cut(s) 882
BglII AGATCT 2 cut(s) 493, 1227
BisI GCNGC 5 cut(s) 311, 713, 848, 970, 1110
BlnI CCTAGG 1 cut(s) 335
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 5 cut(s) 312, 714, 849, 971, 1111
BmcAI AGTACT 1 cut(s) 893
BmeT110I CYCGRG 1 cut(s) 1172
BmiI GGNNCC 2 cut(s) 67, 424
BmrI ACTGGG 1 cut(s) 923
BmsI GCATC 6 cut(s) 112, 190, 232, 670, 691, 922
BmuI ACTGGG 1 cut(s) 923
BpiI GAAGAC 2 cut(s) 40, 807
BpmI CTGGAG 4 cut(s) 432, 863, 1115, 1174
Bpu10I CCTNAGC 1 cut(s) 999
Bpu1102I GCTNAGC 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 454, 581
BsaI GGTCTC 1 cut(s) 1169
BsaJI CCNNGG 3 cut(s) 335, 624, 1179
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 1033, 1063
Bse1I ACTGG 3 cut(s) 276, 846, 918
Bse3DI GCAATG 2 cut(s) 176, 291
BseDI CCNNGG 3 cut(s) 335, 624, 1179
BseGI GGATG 4 cut(s) 127, 139, 778, 937
BseLI CCNNNNNNNGG 2 cut(s) 1033, 1063
BseMI GCAATG 2 cut(s) 176, 291
BseMII CTCAG 4 cut(s) 237, 525, 730, 845
BseNI ACTGG 3 cut(s) 276, 846, 918
BseRI GAGGAG 2 cut(s) 123, 467
BseXI GCAGC 5 cut(s) 322, 724, 859, 981, 1096
BsgI GTGCAG 1 cut(s) 113
Bsh1236I CGCG 2 cut(s) 967, 1054
BshFI GGCC 1 cut(s) 401
BshNI GGYRCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 1190
BsiHKCI CYCGRG 1 cut(s) 1172
BsiSI CCGG 1 cut(s) 1027
BslI CCNNNNNNNGG 2 cut(s) 1033, 1063
BsmAI GTCTC 5 cut(s) 25, 530, 557, 998, 1169
BsmBI CGTCTC 1 cut(s) 998
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 1 cut(s) 401
Bso31I GGTCTC 1 cut(s) 1169
BsoBI CYCGRG 1 cut(s) 1172
Bsp1286I GDGCHC 2 cut(s) 256, 1190
Bsp1407I TGTACA 1 cut(s) 1284
Bsp1720I GCTNAGC 1 cut(s) 246
Bsp19I CCATGG 1 cut(s) 1179
BspACI CCGC 3 cut(s) 367, 524, 972
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 4 cut(s) 238, 526, 729, 846
BspFNI CGCG 2 cut(s) 967, 1054
BspLI GGNNCC 2 cut(s) 67, 424
BspPI GGATC 6 cut(s) 468, 534, 957, 987, 1025, 1074
BspT107I GGYRCC 1 cut(s) 422
BspTI CTTAAG 2 cut(s) 281, 584
BspTNI GGTCTC 1 cut(s) 1169
BsrDI GCAATG 2 cut(s) 176, 291
BsrGI TGTACA 1 cut(s) 1284
BsrI ACTGG 3 cut(s) 276, 846, 918
BssECI CCNNGG 3 cut(s) 335, 624, 1179
BssT1I CCWWGG 2 cut(s) 335, 1179
Bst4CI ACNGT 2 cut(s) 946, 1267
Bst6I CTCTTC 1 cut(s) 882
BstAFI CTTAAG 2 cut(s) 281, 584
BstAUI TGTACA 1 cut(s) 1284
BstC8I GCNNGC 3 cut(s) 127, 252, 1294
BstDEI CTNAG 9 cut(s) 246, 386, 534, 716, 768, 783, 854, 999, 1231
BstDSI CCRYGG 2 cut(s) 624, 1179
BstF5I GGATG 4 cut(s) 127, 139, 778, 937
BstFNI CGCG 2 cut(s) 967, 1054
BstHHI GCGC 3 cut(s) 969, 1056, 1101
BstMAI GTCTC 5 cut(s) 25, 530, 557, 998, 1169
BstMWI GCNNNNNNNGC 3 cut(s) 251, 398, 551
BstNSI RCATGY 3 cut(s) 413, 519, 1296
BstUI CGCG 2 cut(s) 967, 1054
BstV1I GCAGC 5 cut(s) 322, 724, 859, 981, 1096
BstV2I GAAGAC 2 cut(s) 40, 807
BstX2I RGATCY 4 cut(s) 460, 493, 979, 1227
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 4 cut(s) 460, 493, 979, 1227
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 1 cut(s) 401
BtgI CCRYGG 2 cut(s) 624, 1179
BtsCI GGATG 4 cut(s) 127, 139, 778, 937
BtsI GCAGTG 2 cut(s) 101, 1083
BtsIMutI CAGTG 3 cut(s) 101, 951, 1083
Cac8I GCNNGC 3 cut(s) 127, 252, 1294
CaiI CAGNNNCTG 2 cut(s) 673, 853
CfoI GCGC 3 cut(s) 969, 1056, 1101
CseI GACGC 1 cut(s) 973
Csp6I GTAC 3 cut(s) 423, 892, 1285
CviAII CATG 9 cut(s) 403, 410, 482, 516, 644, 1180, 1211, 1288, 1293
CviQI GTAC 3 cut(s) 423, 892, 1285
DdeI CTNAG 9 cut(s) 246, 386, 534, 716, 768, 783, 854, 999, 1231
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
EciI GGCGGA 1 cut(s) 539
Ecl136II GAGCTC 1 cut(s) 1188
Eco130I CCWWGG 2 cut(s) 335, 1179
Eco24I GRGCYC 2 cut(s) 256, 1190
Eco31I GGTCTC 1 cut(s) 1169
Eco53kI GAGCTC 1 cut(s) 1188
Eco57I CTGAAG 2 cut(s) 561, 806
Eco88I CYCGRG 1 cut(s) 1172
EcoICRI GAGCTC 1 cut(s) 1188
EcoT14I CCWWGG 2 cut(s) 335, 1179
EcoT22I ATGCAT 1 cut(s) 1298
EcoT38I GRGCYC 2 cut(s) 256, 1190
ErhI CCWWGG 2 cut(s) 335, 1179
Esp3I CGTCTC 1 cut(s) 998
FaeI CATG 9 cut(s) 406, 413, 485, 519, 647, 1183, 1214, 1291, 1296
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FatI CATG 9 cut(s) 402, 409, 481, 515, 643, 1179, 1210, 1287, 1292
FauI CCCGC 1 cut(s) 360
FbaI TGATCA 3 cut(s) 3, 379, 436
Fnu4HI GCNGC 5 cut(s) 311, 713, 848, 970, 1110
FokI GGATG 4 cut(s) 134, 146, 785, 944
FriOI GRGCYC 2 cut(s) 256, 1190
Fsp4HI GCNGC 5 cut(s) 311, 713, 848, 970, 1110
FspBI CTAG 3 cut(s) 336, 605, 684
GlaI GCGC 3 cut(s) 968, 1055, 1100
GluI GCNGC 5 cut(s) 311, 713, 848, 970, 1110
GsuI CTGGAG 4 cut(s) 432, 863, 1115, 1174
HaeIII GGCC 1 cut(s) 401
HapII CCGG 1 cut(s) 1027
HgaI GACGC 1 cut(s) 973
HhaI GCGC 3 cut(s) 969, 1056, 1101
Hin1II CATG 9 cut(s) 406, 413, 485, 519, 647, 1183, 1214, 1291, 1296
Hin6I GCGC 3 cut(s) 967, 1054, 1099
HinP1I GCGC 3 cut(s) 967, 1054, 1099
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 4 cut(s) 445, 664, 1030, 1114
HpaII CCGG 1 cut(s) 1027
HphI GGTGA 4 cut(s) 659, 973, 1004, 1160
Hpy166II GTNNAC 2 cut(s) 1216, 1285
Hpy188I TCNGA 7 cut(s) 133, 268, 719, 730, 825, 908, 931
Hpy188III TCNNGA 5 cut(s) 449, 471, 668, 1094, 1253
Hpy8I GTNNAC 2 cut(s) 1216, 1285
Hpy99I CGWCG 2 cut(s) 961, 1012
HpyAV CCTTC 3 cut(s) 76, 451, 1249
HpyCH4III ACNGT 2 cut(s) 946, 1267
HpyCH4IV ACGT 1 cut(s) 956
HpyCH4V TGCA 9 cut(s) 94, 176, 181, 519, 643, 704, 920, 1149, 1296
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 398, 551
HpyF3I CTNAG 9 cut(s) 246, 386, 534, 716, 768, 783, 854, 999, 1231
HpySE526I ACGT 1 cut(s) 956
Hsp92II CATG 9 cut(s) 406, 413, 485, 519, 647, 1183, 1214, 1291, 1296
HspAI GCGC 3 cut(s) 967, 1054, 1099
KpnI GGTACC 1 cut(s) 426
Ksp22I TGATCA 3 cut(s) 3, 379, 436
LmnI GCTCC 4 cut(s) 65, 844, 1096, 1193
Lsp1109I GCAGC 5 cut(s) 322, 724, 859, 981, 1096
LweI GCATC 6 cut(s) 112, 190, 232, 670, 691, 922
MaeI CTAG 3 cut(s) 336, 605, 684
MaeII ACGT 1 cut(s) 956
MaeIII GTNAC 2 cut(s) 220, 961
MfeI CAATTG 1 cut(s) 755
MflI RGATCY 4 cut(s) 460, 493, 979, 1227
MhlI GDGCHC 2 cut(s) 256, 1190
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 9 cut(s) 207, 237, 375, 568, 637, 723, 755, 984, 1248
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 439
Mox20I TGGCCA 1 cut(s) 401
Mph1103I ATGCAT 1 cut(s) 1298
MroXI GAANNNNTTC 1 cut(s) 724
MscI TGGCCA 1 cut(s) 401
MseI TTAA 6 cut(s) 51, 282, 320, 498, 572, 585
Msp20I TGGCCA 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 972
MspCI CTTAAG 2 cut(s) 281, 584
MspI CCGG 1 cut(s) 1027
MunI CAATTG 1 cut(s) 755
Mva1269I GAATGC 1 cut(s) 304
MvnI CGCG 2 cut(s) 967, 1054
MwoI GCNNNNNNNGC 3 cut(s) 251, 398, 551
NcoI CCATGG 1 cut(s) 1179
NlaIII CATG 9 cut(s) 406, 413, 485, 519, 647, 1183, 1214, 1291, 1296
NlaIV GGNNCC 2 cut(s) 67, 424
NmuCI GTSAC 1 cut(s) 961
NsiI ATGCAT 1 cut(s) 1298
NspI RCATGY 3 cut(s) 413, 519, 1296
PaeI GCATGC 1 cut(s) 1296
PctI GAATGC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 3 cut(s) 664, 1030, 1114
PkrI GCNGC 5 cut(s) 312, 714, 849, 971, 1111
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PsiI TTATAA 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 1190
PspN4I GGNNCC 2 cut(s) 67, 424
PstNI CAGNNNCTG 2 cut(s) 673, 853
PsuI RGATCY 4 cut(s) 460, 493, 979, 1227
RsaI GTAC 3 cut(s) 424, 893, 1286
RsaNI GTAC 3 cut(s) 423, 892, 1285
SacI GAGCTC 1 cut(s) 1190
SaqAI TTAA 6 cut(s) 51, 282, 320, 498, 572, 585
SatI GCNGC 5 cut(s) 311, 713, 848, 970, 1110
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 1 cut(s) 439
SduI GDGCHC 2 cut(s) 256, 1190
SfaNI GCATC 6 cut(s) 112, 190, 232, 670, 691, 922
SmlI CTYRAG 4 cut(s) 281, 469, 560, 584
SmoI CTYRAG 4 cut(s) 281, 469, 560, 584
SphI GCATGC 1 cut(s) 1296
Sse9I AATT 9 cut(s) 207, 237, 375, 568, 637, 723, 755, 984, 1248
SsiI CCGC 3 cut(s) 367, 524, 972
SspMI CTAG 3 cut(s) 336, 605, 684
SstI GAGCTC 1 cut(s) 1190
StyI CCWWGG 2 cut(s) 335, 1179
TaaI ACNGT 2 cut(s) 946, 1267
TaiI ACGT 1 cut(s) 959
TaqI TCGA 6 cut(s) 529, 749, 952, 1020, 1140, 1154
TasI AATT 9 cut(s) 207, 237, 375, 568, 637, 723, 755, 984, 1248
TatI WGTACW 2 cut(s) 891, 1284
TfiI GAWTC 3 cut(s) 664, 1030, 1114
Tru1I TTAA 6 cut(s) 51, 282, 320, 498, 572, 585
Tru9I TTAA 6 cut(s) 51, 282, 320, 498, 572, 585
TscAI CASTG 3 cut(s) 101, 951, 1090
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 5 cut(s) 310, 712, 847, 969, 1109
Tsp45I GTSAC 1 cut(s) 961
TspDTI ATGAA 6 cut(s) 419, 498, 669, 789, 843, 915
TspGWI ACGGA 2 cut(s) 613, 1025
TspRI CASTG 3 cut(s) 101, 951, 1090
Vha464I CTTAAG 2 cut(s) 281, 584
XapI RAATTY 1 cut(s) 723
XceI RCATGY 3 cut(s) 413, 519, 1296
XmaJI CCTAGG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 3 cut(s) 336, 605, 684
ZrmI AGTACT 1 cut(s) 893
Zsp2I ATGCAT 1 cut(s) 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.