Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

6479414 .. 6483348

Gene Structure 3935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG082900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGTGGCCAGCCGTTCCCTTTCCACTCAGCATCTTCGAAAACATAACTGCAATAGTCGTAAATAAAGATTGTATGAGAAGGAGAGAGATTGCTATTGCTCATGATCCAAGGATTTGGGCTCTCACCTTTGTATTCGTCTCTATCTCCTTCAGTATCAGTCGTTTGTGGACTCTTCAATCAAAGTATTGTGCGTGTATTCTTAATGCTACCAGAGGGGACTATCCTCTCGGTTCTAAGACTTTTTGGTTGGGTAAGATCAAGAAGCTGCAAAAAAAATTGGAGGCATTTGGCTGCACGGTCTCGTACAATTCGAGGAGCGAAAAGCCGTCTTTGTCGTACCTATTCTATTCCAATCAAGCTGTTCTTACACATGAAGCTTTTGTGGGTTTGGCTGAATTAGTAACAGGGAATTTGGAAGCATTCTTCTCAATCAACCGTTGCTTTCTGTTTGCAGATGAAAGACAAACTAGGCATACCAGAACTTTCCAAGAAGACTTCACTCACATTCCCGGATTCATGACTTCTCATCCTTTGAGTGAAGAATTTTTGGAGCAACGGCCTATAGCATTGAGCTTACACATAGATGAGAAAATTACAAAACTTGTAACTGAACAGCAGAAAGATGATGCTGAGCGAGCCCATGTCAAATCAGAACTGGAAGAGCTTGAGCAGGACATTGCGAATGCTAATAAGCAGCAAAGTTTAAGTTATAAAGCACCTGGGAATAAGGAAAAATCACTTGCTGATGTGCGGGTTCAAATTGATCAGCTTAGAGCTAAGGAGAAGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTTAAAGAGAAGCTTATTACATGCAAGGCGGATCGAACTGAGACTGAAGCAACAAAGGCAGAGCTTGAGACTAATTTAACTACAACCCTTAAGCGGCGAAAGCAAGAACTAGAGGCAATAATATCTTCTGTGGAAACTGATAGTTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCAACAGAGCAGCTCAGAAGAGTTTCTGAAAGTATTGATGGTCAGTTGAGGCAATTGAGGAAAACTAAGGATGAAAAGACTAAGTTGAAGAACTTGGAAGACAACTATGAGAGGACCCTTCAGGATGAAGCTAAACAGCTGGAGCAGAATGCTTACGCCTATCACATGTTACTTGAGCCAAGCTCTAGTGACTTGGATCCTGTAGGGTTGCTATATATGCTAGACAAAGTAGAAAAACATCTGAGGATGGATTATTTTATCAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

425

Amino Acids

49.06

Weight (kDa)

5.92

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
AciI	CCGC	3 cut(s)	751, 851, 916
AclWI	GGATC	5 cut(s)	98, 795, 861, 1199, 1212
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	409, 542
AcuI	CTGAAG	3 cut(s)	133, 888, 1112
AfaI	GTAC	2 cut(s)	305, 338
AfiI	CCNNNNNNNGG	1 cut(s)	915
AflII	CTTAAG	1 cut(s)	911
AflIII	ACRYGT	1 cut(s)	1173
AgsI	TTSAA	4 cut(s)	176, 758, 805, 1096
AjnI	CCWGG	1 cut(s)	718
Alw26I	GTCTC	4 cut(s)	142, 304, 857, 884
AlwI	GGATC	5 cut(s)	98, 795, 861, 1199, 1212
AlwNI	CAGNNNCTG	1 cut(s)	1000
AoxI	GGCC	2 cut(s)	5, 557
ApeKI	GCWGC	4 cut(s)	265, 291, 694, 1018
ApoI	RAATTY	2 cut(s)	409, 542
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspS9I	GGNCC	1 cut(s)	1122
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	115, 986
AsuII	TTCGAA	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	1122
BalI	TGGCCA	1 cut(s)	7
BamHI	GGATCC	1 cut(s)	1204
BanII	GRGCYC	2 cut(s)	121, 640
BbsI	GAAGAC	2 cut(s)	498, 1113
BbvI	GCAGC	4 cut(s)	252, 278, 706, 1030
BccI	CCATC	2 cut(s)	1040, 1249
BceAI	ACGGC	2 cut(s)	310, 572
BciT130I	CCWGG	1 cut(s)	720
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	4 cut(s)	142, 304, 857, 884
BfaI	CTAG	4 cut(s)	468, 932, 1194, 1229
BfmI	CTRYAG	2 cut(s)	561, 1209
BfrI	CTTAAG	1 cut(s)	911
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	5 cut(s)	267, 293, 696, 918, 1020
Bme1390I	CCNGG	2 cut(s)	510, 720
Bme18I	GGWCC	1 cut(s)	1122
BmgT120I	GGNCC	1 cut(s)	1122
BmiI	GGNNCC	2 cut(s)	1124, 1206
BmrFI	CCNGG	2 cut(s)	510, 720
BmsI	GCATC	3 cut(s)	39, 616, 997
BpiI	GAAGAC	2 cut(s)	498, 1113
BplI	GAGNNNNNCTC	2 cut(s)	1175, 1207
BpmI	CTGGAG	1 cut(s)	1169
Bpu10I	CCTNAGC	1 cut(s)	777
Bpu1102I	GCTNAGC	1 cut(s)	630
Bpu14I	TTCGAA	1 cut(s)	36
BpuEI	CTTGAG	4 cut(s)	686, 781, 908, 1202
BpuMI	CCSGG	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	107, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	915
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	107, 719
BseGI	GGATG	4 cut(s)	526, 1084, 1138, 1260
BseLI	CCNNNNNNNGG	1 cut(s)	915
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	5 cut(s)	40, 621, 852, 1036, 1241
BseNI	ACTGG	1 cut(s)	660
BseRI	GAGGAG	1 cut(s)	328
BseXI	GCAGC	4 cut(s)	252, 278, 706, 1030
BsgI	GTGCAG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	7, 559
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	915
BsmAI	GTCTC	4 cut(s)	142, 304, 857, 884
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	3 cut(s)	419, 688, 1162
BsnI	GGCC	2 cut(s)	7, 559
Bso31I	GGTCTC	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	121, 640
Bsp143I	GATC	7 cut(s)	103, 255, 763, 787, 820, 853, 1204
Bsp1720I	GCTNAGC	1 cut(s)	630
BspACI	CCGC	3 cut(s)	751, 851, 916
BspANI	GGCC	2 cut(s)	7, 559
BspCNI	CTCAG	5 cut(s)	39, 622, 853, 1035, 1242
BspHI	TCATGA	2 cut(s)	100, 516
BspLI	GGNNCC	2 cut(s)	1124, 1206
BspPI	GGATC	5 cut(s)	98, 795, 861, 1199, 1212
BspQI	GCTCTTC	1 cut(s)	654
BspT104I	TTCGAA	1 cut(s)	36
BspTI	CTTAAG	1 cut(s)	911
BspTNI	GGTCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	660
BssECI	CCNNGG	2 cut(s)	107, 719
BssMI	GATC	7 cut(s)	103, 255, 763, 787, 820, 853, 1204
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	2 cut(s)	298, 437
Bst6I	CTCTTC	3 cut(s)	177, 654, 1021
BstAFI	CTTAAG	1 cut(s)	911
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	9, 636
BstF5I	GGATG	4 cut(s)	526, 1084, 1138, 1260
BstKTI	GATC	7 cut(s)	106, 258, 766, 790, 823, 856, 1207
BstMAI	GTCTC	4 cut(s)	142, 304, 857, 884
BstMBI	GATC	7 cut(s)	103, 255, 763, 787, 820, 853, 1204
BstMWI	GCNNNNNNNGC	4 cut(s)	635, 878, 922, 1225
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	2 cut(s)	846, 1177
BstSCI	CCNGG	2 cut(s)	508, 718
BstSFI	CTRYAG	2 cut(s)	561, 1209
BstV1I	GCAGC	4 cut(s)	252, 278, 706, 1030
BstV2I	GAAGAC	2 cut(s)	498, 1113
BstX2I	RGATCY	3 cut(s)	787, 820, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	114
BstYI	RGATCY	3 cut(s)	787, 820, 1204
BsuRI	GGCC	2 cut(s)	7, 559
BtsCI	GGATG	4 cut(s)	526, 1084, 1138, 1260
Cac8I	GCNNGC	2 cut(s)	9, 636
CaiI	CAGNNNCTG	1 cut(s)	1000
CciI	TCATGA	2 cut(s)	100, 516
Cfr13I	GGNCC	1 cut(s)	1122
Csp6I	GTAC	2 cut(s)	304, 337
CviAII	CATG	7 cut(s)	101, 371, 517, 641, 843, 971, 1174
CviQI	GTAC	2 cut(s)	304, 337
DpnI	GATC	7 cut(s)	105, 257, 765, 789, 822, 855, 1206
DpnII	GATC	7 cut(s)	103, 255, 763, 787, 820, 853, 1204
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	3 cut(s)	177, 654, 1021
EarI	CTCTTC	3 cut(s)	177, 654, 1021
EciI	GGCGGA	1 cut(s)	866
Eco130I	CCWWGG	1 cut(s)	107
Eco24I	GRGCYC	2 cut(s)	121, 640
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	1122
Eco57I	CTGAAG	3 cut(s)	133, 888, 1112
EcoO109I	RGGNCCY	1 cut(s)	1122
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	2 cut(s)	121, 640
ErhI	CCWWGG	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	7 cut(s)	104, 374, 520, 644, 846, 974, 1177
FalI	AAGNNNNNCTT	4 cut(s)	348, 380, 819, 851
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	7 cut(s)	100, 370, 516, 640, 842, 970, 1173
FauI	CCCGC	1 cut(s)	744
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
FokI	GGATG	4 cut(s)	513, 1091, 1145, 1267
FriOI	GRGCYC	2 cut(s)	121, 640
Fsp4HI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
FspBI	CTAG	4 cut(s)	468, 932, 1194, 1229
GluI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
GsuI	CTGGAG	1 cut(s)	1169
HaeIII	GGCC	2 cut(s)	7, 559
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	7 cut(s)	104, 374, 520, 644, 846, 974, 1177
HindIII	AAGCTT	2 cut(s)	375, 833
HinfI	GANTC	3 cut(s)	169, 513, 991
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	2 cut(s)	115, 986
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	4 cut(s)	652, 1025, 1036, 1251
Hpy188III	TCNNGA	6 cut(s)	101, 259, 517, 798, 995, 1130
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	4 cut(s)	72, 157, 778, 1136
HpyCH4III	ACNGT	2 cut(s)	298, 437
HpyCH4V	TGCA	7 cut(s)	50, 268, 294, 452, 846, 970, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	635, 878, 922, 1225
Hsp92II	CATG	7 cut(s)	104, 374, 520, 644, 846, 974, 1177
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	7 cut(s)	103, 255, 763, 787, 820, 853, 1204
LguI	GCTCTTC	1 cut(s)	654
LmnI	GCTCC	3 cut(s)	315, 550, 1150
Lsp1109I	GCAGC	4 cut(s)	252, 278, 706, 1030
LweI	GCATC	3 cut(s)	39, 616, 997
MaeI	CTAG	4 cut(s)	468, 932, 1194, 1229
MaeIII	GTNAC	4 cut(s)	400, 604, 1176, 1196
MalI	GATC	7 cut(s)	105, 257, 765, 789, 822, 855, 1206
MboI	GATC	7 cut(s)	103, 255, 763, 787, 820, 853, 1204
MfeI	CAATTG	1 cut(s)	1061
MflI	RGATCY	3 cut(s)	787, 820, 1204
MhlI	GDGCHC	2 cut(s)	121, 640
MlsI	TGGCCA	1 cut(s)	7
MluCI	AATT	9 cut(s)	275, 307, 395, 409, 542, 591, 759, 895, 1061
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	9 cut(s)	206, 234, 274, 306, 928, 1050, 1059, 1113, 1245
Mox20I	TGGCCA	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	1030
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	5 cut(s)	201, 704, 825, 899, 912
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	7
MspA1I	CMGCKG	1 cut(s)	1147
MspCI	CTTAAG	1 cut(s)	911
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	2 cut(s)	510, 720
MunI	CAATTG	1 cut(s)	1061
Mva1269I	GAATGC	3 cut(s)	419, 688, 1162
MvaI	CCWGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	4 cut(s)	635, 878, 922, 1225
NciI	CCSGG	1 cut(s)	510
NdeII	GATC	7 cut(s)	103, 255, 763, 787, 820, 853, 1204
NlaIII	CATG	7 cut(s)	104, 374, 520, 644, 846, 974, 1177
NlaIV	GGNNCC	2 cut(s)	1124, 1206
NmuCI	GTSAC	1 cut(s)	1196
NspI	RCATGY	2 cut(s)	846, 1177
NspV	TTCGAA	1 cut(s)	36
PagI	TCATGA	2 cut(s)	100, 516
PciI	ACATGT	1 cut(s)	1173
PciSI	GCTCTTC	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PctI	GAATGC	3 cut(s)	419, 688, 1162
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	2 cut(s)	513, 991
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	5 cut(s)	267, 293, 696, 918, 1020
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	1122
PscI	ACATGT	1 cut(s)	1173
PsiI	TTATAA	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	1122
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	2 cut(s)	1124, 1206
PspPI	GGNCC	1 cut(s)	1122
PspPPI	RGGWCCY	1 cut(s)	1122
PstNI	CAGNNNCTG	1 cut(s)	1000
PsuI	RGATCY	3 cut(s)	787, 820, 1204
PvuII	CAGCTG	1 cut(s)	1147
RsaI	GTAC	2 cut(s)	305, 338
RsaNI	GTAC	2 cut(s)	304, 337
RseI	CAYNNNNRTG	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	654
SaqAI	TTAA	5 cut(s)	201, 704, 825, 899, 912
SatI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
Sau3AI	GATC	7 cut(s)	103, 255, 763, 787, 820, 853, 1204
Sau96I	GGNCC	1 cut(s)	1122
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	510, 720
SduI	GDGCHC	2 cut(s)	121, 640
SfaNI	GCATC	3 cut(s)	39, 616, 997
SfcI	CTRYAG	2 cut(s)	561, 1209
SfuI	TTCGAA	1 cut(s)	36
SinI	GGWCC	1 cut(s)	1122
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	5 cut(s)	665, 796, 887, 911, 1181
SmoI	CTYRAG	5 cut(s)	665, 796, 887, 911, 1181
Sse9I	AATT	9 cut(s)	275, 307, 395, 409, 542, 591, 759, 895, 1061
SsiI	CCGC	3 cut(s)	751, 851, 916
SspMI	CTAG	4 cut(s)	468, 932, 1194, 1229
StyD4I	CCNGG	2 cut(s)	508, 718
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	298, 437
TaqI	TCGA	3 cut(s)	36, 311, 856
TasI	AATT	9 cut(s)	275, 307, 395, 409, 542, 591, 759, 895, 1061
TauI	GCSGC	1 cut(s)	919
TfiI	GAWTC	2 cut(s)	513, 991
Tru1I	TTAA	5 cut(s)	201, 704, 825, 899, 912
Tru9I	TTAA	5 cut(s)	201, 704, 825, 899, 912
TseFI	GTSAC	1 cut(s)	1196
TseI	GCWGC	4 cut(s)	265, 291, 694, 1018
Tsp45I	GTSAC	1 cut(s)	1196
TspDTI	ATGAA	6 cut(s)	387, 471, 505, 996, 1095, 1149
Vha464I	CTTAAG	1 cut(s)	911
VpaK11BI	GGWCC	1 cut(s)	1122
XapI	RAATTY	2 cut(s)	409, 542
XceI	RCATGY	2 cut(s)	846, 1177
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	4 cut(s)	468, 932, 1194, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.