Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

20698064 .. 20701307

Gene Structure 3244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00181640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCCATGAAGCATGTTGAAATGGGTACCGATCTCATTGATCATTTGACTCCAGAGGAGAAGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTTAAAGAGAAGCTTATTACATGCAAGGCGGATGGAACTGAGACTGAAGCAAGAAAGGCAGAGCTTGAGACTAATTTAACTACGAACCTTAAGAGGCGAAAGCAAGAACTAGAGGCAATAATATCTTCCGTGGAAACTAATAATTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCTAGATTATTGGTTGAAGATGCAACAGAGCAGCTCAGAAGAGTTTCTGAAAGTATTGATGGTCAGTCGAGGCAATTGAGGAAAACTAAGGATGAAAAGACTAAGTTGAAGAACTTGGAAGACAACTATGAGAGGACACTTCAGGATGAAGCCAAACAGCTGGAGCAGCTACTGAGTAAAAGAAATATGTATCCTGCTAAACAAGAAGAGTACTCAAAGGAAGTCAGAGAACTGGGTGCATTTTCATCGGATGCTTTTGAAACGTATTACTTATGTTCATACTTTGAGTACATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

194

Amino Acids

22.64

Weight (kDa)

4.9

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	165, 410
AfaI	GTAC	3 cut(s)	28, 497, 575
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	5 cut(s)	20, 82, 302, 394, 545
AluBI	AGCT	5 cut(s)	112, 163, 319, 445, 454
AluI	AGCT	5 cut(s)	112, 163, 319, 445, 454
Alw26I	GTCTC	2 cut(s)	134, 161
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	2 cut(s)	277, 457
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	316, 451
Asp700I	GAANNNNTTC	1 cut(s)	328
Asp718I	GGTACC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	328, 463
BccI	CCATC	2 cut(s)	125, 338
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	134, 161
BfaI	CTAG	3 cut(s)	209, 288, 583
BfrI	CTTAAG	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	486
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	2 cut(s)	317, 452
BlsI	GCNGC	2 cut(s)	318, 453
BmcAI	AGTACT	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	28
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	3 cut(s)	274, 295, 526
BmuI	ACTGGG	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	2 cut(s)	36, 467
BpuEI	CTTGAG	2 cut(s)	58, 185
BsaJI	CCNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	522
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	4 cut(s)	136, 382, 436, 541
BseMII	CTCAG	3 cut(s)	129, 334, 449
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	328, 463
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	134, 161
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	4 cut(s)	31, 40, 64, 97
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	130, 333, 450
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	31, 40, 64, 97
Bst6I	CTCTTC	2 cut(s)	319, 486
BstAFI	CTTAAG	1 cut(s)	188
BstDEI	CTNAG	5 cut(s)	138, 320, 372, 387, 458
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	136, 382, 436, 541
BstKTI	GATC	4 cut(s)	34, 43, 67, 100
BstMAI	GTCTC	2 cut(s)	134, 161
BstMBI	GATC	4 cut(s)	31, 40, 64, 97
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 451
BstNSI	RCATGY	2 cut(s)	17, 123
BstV1I	GCAGC	2 cut(s)	328, 463
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	2 cut(s)	64, 97
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	2 cut(s)	64, 97
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	4 cut(s)	136, 382, 436, 541
CaiI	CAGNNNCTG	2 cut(s)	277, 457
Csp6I	GTAC	3 cut(s)	27, 496, 574
CviAII	CATG	4 cut(s)	7, 14, 120, 248
CviJI	RGCY	7 cut(s)	5, 112, 163, 319, 437, 445, 454
CviKI_1	RGCY	7 cut(s)	5, 112, 163, 319, 437, 445, 454
CviQI	GTAC	3 cut(s)	27, 496, 574
DdeI	CTNAG	5 cut(s)	138, 320, 372, 387, 458
DpnI	GATC	4 cut(s)	33, 42, 66, 99
DpnII	GATC	4 cut(s)	31, 40, 64, 97
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	319, 486
EarI	CTCTTC	2 cut(s)	319, 486
EciI	GGCGGA	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	165, 410
FaeI	CATG	4 cut(s)	10, 17, 123, 251
FaiI	YATR	8 cut(s)	8, 15, 121, 249, 414, 473, 559, 565
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	4 cut(s)	6, 13, 119, 247
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	317, 452
FokI	GGATG	4 cut(s)	143, 389, 443, 548
Fsp4HI	GCNGC	2 cut(s)	317, 452
FspBI	CTAG	3 cut(s)	209, 288, 583
GluI	GCNGC	2 cut(s)	317, 452
GsuI	CTGGAG	2 cut(s)	36, 467
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	10, 17, 123, 251
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	49, 268
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	4 cut(s)	323, 334, 512, 535
Hpy188III	TCNNGA	4 cut(s)	53, 75, 272, 428
HpyAV	CCTTC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	4 cut(s)	123, 247, 308, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 451
HpyF3I	CTNAG	5 cut(s)	138, 320, 372, 387, 458
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	4 cut(s)	10, 17, 123, 251
KpnI	GGTACC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	31, 40, 64, 97
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	66, 99, 257, 413, 431, 492, 503
Lsp1109I	GCAGC	2 cut(s)	328, 463
LweI	GCATC	3 cut(s)	274, 295, 526
MaeI	CTAG	3 cut(s)	209, 288, 583
MaeII	ACGT	1 cut(s)	548
MalI	GATC	4 cut(s)	33, 42, 66, 99
MboI	GATC	4 cut(s)	31, 40, 64, 97
MboII	GAAGA	9 cut(s)	59, 216, 266, 314, 336, 406, 416, 503, 571
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	2 cut(s)	64, 97
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	172, 241, 359
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	6 cut(s)	49, 186, 205, 348, 357, 411
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	102, 176, 189
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	445
MspCI	CTTAAG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	155, 451
NdeII	GATC	4 cut(s)	31, 40, 64, 97
NlaIII	CATG	4 cut(s)	10, 17, 123, 251
NlaIV	GGNNCC	1 cut(s)	28
NspI	RCATGY	2 cut(s)	17, 123
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	318, 453
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	28
PstNI	CAGNNNCTG	2 cut(s)	277, 457
PsuI	RGATCY	2 cut(s)	64, 97
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	3 cut(s)	28, 497, 575
RsaNI	GTAC	3 cut(s)	27, 496, 574
SaqAI	TTAA	3 cut(s)	102, 176, 189
SatI	GCNGC	2 cut(s)	317, 452
Sau3AI	GATC	4 cut(s)	31, 40, 64, 97
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	1 cut(s)	43
SetI	ASST	7 cut(s)	114, 165, 189, 321, 447, 456, 551
SfaNI	GCATC	3 cut(s)	274, 295, 526
SmlI	CTYRAG	3 cut(s)	73, 164, 188
SmoI	CTYRAG	3 cut(s)	73, 164, 188
Sse9I	AATT	3 cut(s)	172, 241, 359
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	3 cut(s)	209, 288, 583
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	1 cut(s)	353
TasI	AATT	3 cut(s)	172, 241, 359
TatI	WGTACW	2 cut(s)	495, 573
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	3 cut(s)	102, 176, 189
Tru9I	TTAA	3 cut(s)	102, 176, 189
TseI	GCWGC	2 cut(s)	316, 451
TspDTI	ATGAA	6 cut(s)	23, 273, 393, 447, 519, 552
TspGWI	ACGGA	1 cut(s)	217
Vha464I	CTTAAG	1 cut(s)	188
XceI	RCATGY	2 cut(s)	17, 123
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	3 cut(s)	209, 288, 583
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.