Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

46585015 .. 46585468

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG334400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAAGCATGTTGAAATGGGTACCGATCTCATTGATCATTTGACTCCAGAGGAGAAGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTTAAAGTGAAGCTTATTACATGCAAGGCGGATCGAACTGAAACTGAAGCAAGAAAGACAAAGCTTGAGACTAATTTAACTACGAACCTTAAGAGGCGAAAGCAAGAACTAGAGGCAATAATATCTTCCGTGAAAACTGATAATTTGCATGGTGAAGATGAAATAAAGATTCGGGAACTGAATGATGCTAGATTATTGGTTGAAGATGCAACGGAGCAGCTCAGAATTGCCATTTTTAAAAGTTGTTTTCATGCTCCTGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

119

Amino Acids

13.65

Weight (kDa)

5.83

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	66, 132
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	14, 76, 296
AluBI	AGCT	3 cut(s)	106, 157, 313
AluI	AGCT	3 cut(s)	106, 157, 313
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	66, 132
ApeKI	GCWGC	1 cut(s)	310
Asp718I	GGTACC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	203, 282
BfrI	CTTAAG	1 cut(s)	182
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	22
BmsI	GCATC	2 cut(s)	268, 289
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	52, 179
BseMII	CTCAG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	155
Bsp143I	GATC	5 cut(s)	25, 34, 58, 91, 124
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	2 cut(s)	66, 132
BspT107I	GGYRCC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	182
BssMI	GATC	5 cut(s)	25, 34, 58, 91, 124
BstAFI	CTTAAG	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	314
BstKTI	GATC	5 cut(s)	28, 37, 61, 94, 127
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	5 cut(s)	25, 34, 58, 91, 124
BstNSI	RCATGY	2 cut(s)	11, 117
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	58, 91
BstYI	RGATCY	2 cut(s)	58, 91
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	4 cut(s)	8, 114, 242, 344
CviJI	RGCY	3 cut(s)	106, 157, 313
CviKI_1	RGCY	3 cut(s)	106, 157, 313
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	5 cut(s)	27, 36, 60, 93, 126
DpnII	GATC	5 cut(s)	25, 34, 58, 91, 124
DraI	TTTAAA	1 cut(s)	331
EciI	GGCGGA	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	159
FaeI	CATG	4 cut(s)	11, 117, 245, 347
FaiI	YATR	4 cut(s)	9, 115, 243, 345
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	4 cut(s)	7, 113, 241, 343
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	311
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	2 cut(s)	203, 282
GluI	GCNGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	30
Hin1II	CATG	4 cut(s)	11, 117, 245, 347
HindIII	AAGCTT	2 cut(s)	104, 155
HinfI	GANTC	2 cut(s)	43, 262
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	3 cut(s)	47, 69, 266
HpyAV	CCTTC	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	117, 241, 302
HpyF3I	CTNAG	1 cut(s)	314
Hsp92II	CATG	4 cut(s)	11, 117, 245, 347
KpnI	GGTACC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	25, 34, 58, 91, 124
LmnI	GCTCC	2 cut(s)	307, 352
LpnPI	CCDG	2 cut(s)	60, 93
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	268, 289
MaeI	CTAG	2 cut(s)	203, 282
MalI	GATC	5 cut(s)	27, 36, 60, 93, 126
MboI	GATC	5 cut(s)	25, 34, 58, 91, 124
MboII	GAAGA	4 cut(s)	53, 210, 260, 308
MflI	RGATCY	2 cut(s)	58, 91
MluCI	AATT	3 cut(s)	166, 235, 318
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	43, 180, 199
MseI	TTAA	5 cut(s)	96, 170, 183, 330, 358
MspCI	CTTAAG	1 cut(s)	182
NdeII	GATC	5 cut(s)	25, 34, 58, 91, 124
NlaIII	CATG	4 cut(s)	11, 117, 245, 347
NlaIV	GGNNCC	1 cut(s)	22
NspI	RCATGY	2 cut(s)	11, 117
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	58, 91
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	96, 170, 183, 330, 358
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	5 cut(s)	25, 34, 58, 91, 124
SchI	GAGTC	1 cut(s)	37
SetI	ASST	4 cut(s)	108, 159, 183, 315
SfaNI	GCATC	2 cut(s)	268, 289
SmlI	CTYRAG	3 cut(s)	67, 158, 182
SmoI	CTYRAG	3 cut(s)	67, 158, 182
Sse9I	AATT	3 cut(s)	166, 235, 318
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	203, 282
TaqI	TCGA	1 cut(s)	127
TasI	AATT	3 cut(s)	166, 235, 318
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	5 cut(s)	96, 170, 183, 330, 358
Tru9I	TTAA	5 cut(s)	96, 170, 183, 330, 358
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	17, 267, 332
TspGWI	ACGGA	2 cut(s)	211, 320
Vha464I	CTTAAG	1 cut(s)	182
XceI	RCATGY	2 cut(s)	11, 117
XspI	CTAG	2 cut(s)	203, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.