Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Reverse (-)

49504524 .. 49506088

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG246000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATGCTGGCTCGGATGTGTTTGAGAATGAGCCTGATGTTCCTAAAGAGCTCTTTGCATTGCATCATATGTACTGTCACCGCAGCAAGCAGCTGTTCTTACACATGAAGCTTTTGTGGATAGATGAGAAAATTACAAAACTTGTAACTGAACAGCAGAAAATTGATGCTGAGCGAGCCCATGTCAAATCAGAACTGGAACAGCTTAAGCAGGACATTGCGAATGCTAATAAGCAGCAAAGTTTAAGTTATAAAGCACCTGGGAATAAGGAAAAATCACTTGCTGATGTGCGGGTACAAATTGATCAGCTTAGAGCTAGTATGGCCATGAAGCATGTTGAAATGGGTACCTATCTCATTGATCATTTGACTCCAGAGGAGAAGGATCTTCTCTCAAGATTGAACCTTGAAATAGCAGATCTTAAAGAGAAGCTTATTACGTGCAAGGCGGATCGAACTGAGACTGAAGCAAGAAAGGCAGAGCTTGAGACTAATTTAACTACGAACCTTAAGAGGCGAAAGCAAGAACTAGAGGCAGTAATATATTCCGTGGAAACTGATAATTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCTAGATTAGTGGTTGAAGATGTAACAGAGCAGCTCAGAAGAGTTTCTGAAAGTATTGATGGTCAGTCGAGGCAATTGAGGAAAACTAAGGATGAAAAGACTAAGTTGAAGAACTTGGAAGACAACTATGAGAGGACACTTCATGATGAAGCCAAACAGCTAGAGCAGCTACTGAGTAAAAGAAATATGTATCCTGGTAAACAAGAAGAGTACTCAAAGGAAGTCAGAGAACTGGGTGCATTGTCATCGGATGCTTTTGAAACGTATTACTTATGTTCATACTTTGAATTATCTTCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

302

Amino Acids

35.2

Weight (kDa)

5.47

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	347
AciI	CCGC	3 cut(s)	82, 292, 449
AclWI	GGATC	2 cut(s)	393, 459
AcoI	YGGCCR	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	4 cut(s)	74, 297, 349, 818
AflII	CTTAAG	2 cut(s)	206, 509
AgsI	TTSAA	7 cut(s)	341, 403, 410, 623, 715, 866, 893
AjnI	CCWGG	2 cut(s)	259, 799
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	455, 482
AlwI	GGATC	2 cut(s)	393, 459
AlwNI	CAGNNNCTG	2 cut(s)	598, 778
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	5 cut(s)	84, 91, 235, 637, 772
Asp700I	GAANNNNTTC	1 cut(s)	649
Asp718I	GGTACC	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	71, 584
BalI	TGGCCA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	2 cut(s)	54, 181
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	96, 103, 247, 649, 784
BccI	CCATC	1 cut(s)	659
BcgI	CGANNNNNNTGC	2 cut(s)	834, 868
BciT130I	CCWGG	2 cut(s)	261, 801
BciVI	GTATCC	1 cut(s)	807
BclI	TGATCA	2 cut(s)	304, 361
BcoDI	GTCTC	2 cut(s)	455, 482
BfaI	CTAG	4 cut(s)	318, 530, 609, 767
BfrI	CTTAAG	2 cut(s)	206, 509
BfuI	GTATCC	1 cut(s)	807
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	5 cut(s)	85, 92, 236, 638, 773
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	5 cut(s)	86, 93, 237, 639, 774
BmcAI	AGTACT	1 cut(s)	818
Bme1390I	CCNGG	2 cut(s)	261, 801
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	261, 801
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	4 cut(s)	73, 157, 595, 847
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	732
BpmI	CTGGAG	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	379, 506
BsaAI	YACGTR	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	260, 549
Bse1I	ACTGG	2 cut(s)	201, 843
Bse3DI	GCAATG	2 cut(s)	59, 216
BseBI	CCWGG	2 cut(s)	261, 801
BseDI	CCNNGG	2 cut(s)	260, 549
BseGI	GGATG	4 cut(s)	10, 22, 703, 862
BseMI	GCAATG	2 cut(s)	59, 216
BseMII	CTCAG	4 cut(s)	162, 450, 655, 770
BseNI	ACTGG	2 cut(s)	201, 843
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	5 cut(s)	96, 103, 247, 649, 784
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	455, 482
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	54, 181
Bsp143I	GATC	5 cut(s)	304, 361, 385, 418, 451
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	3 cut(s)	82, 292, 449
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	4 cut(s)	163, 451, 654, 771
BspHI	TCATGA	1 cut(s)	748
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	393, 459
BspT107I	GGYRCC	1 cut(s)	347
BspTI	CTTAAG	2 cut(s)	206, 509
BsrDI	GCAATG	2 cut(s)	59, 216
BsrI	ACTGG	2 cut(s)	201, 843
BssECI	CCNNGG	2 cut(s)	260, 549
BssMI	GATC	5 cut(s)	304, 361, 385, 418, 451
Bst2UI	CCWGG	2 cut(s)	261, 801
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	640, 807
BstAFI	CTTAAG	2 cut(s)	206, 509
BstBAI	YACGTR	1 cut(s)	441
BstC8I	GCNNGC	3 cut(s)	10, 89, 177
BstDEI	CTNAG	8 cut(s)	171, 311, 459, 641, 693, 708, 779, 903
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	4 cut(s)	10, 22, 703, 862
BstKTI	GATC	5 cut(s)	307, 364, 388, 421, 454
BstMAI	GTCTC	2 cut(s)	455, 482
BstMBI	GATC	5 cut(s)	304, 361, 385, 418, 451
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 323, 476, 772
BstNI	CCWGG	2 cut(s)	261, 801
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	259, 799
BstV1I	GCAGC	5 cut(s)	96, 103, 247, 649, 784
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	2 cut(s)	385, 418
BstYI	RGATCY	2 cut(s)	385, 418
BsuI	GTATCC	1 cut(s)	807
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	4 cut(s)	10, 22, 703, 862
Cac8I	GCNNGC	3 cut(s)	10, 89, 177
CaiI	CAGNNNCTG	2 cut(s)	598, 778
CciI	TCATGA	1 cut(s)	748
Csp6I	GTAC	4 cut(s)	73, 296, 348, 817
CviAII	CATG	6 cut(s)	106, 182, 328, 335, 569, 749
CviQI	GTAC	4 cut(s)	73, 296, 348, 817
DdeI	CTNAG	8 cut(s)	171, 311, 459, 641, 693, 708, 779, 903
DpnI	GATC	5 cut(s)	306, 363, 387, 420, 453
DpnII	GATC	5 cut(s)	304, 361, 385, 418, 451
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	640, 807
EarI	CTCTTC	2 cut(s)	640, 807
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	2 cut(s)	54, 181
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	259, 799
EcoT38I	GRGCYC	2 cut(s)	54, 181
FaeI	CATG	6 cut(s)	109, 185, 331, 338, 572, 752
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	6 cut(s)	105, 181, 327, 334, 568, 748
FauI	CCCGC	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	69
FbaI	TGATCA	2 cut(s)	304, 361
Fnu4HI	GCNGC	5 cut(s)	85, 92, 236, 638, 773
FokI	GGATG	4 cut(s)	17, 29, 710, 869
FriOI	GRGCYC	2 cut(s)	54, 181
Fsp4HI	GCNGC	5 cut(s)	85, 92, 236, 638, 773
FspBI	CTAG	4 cut(s)	318, 530, 609, 767
GluI	GCNGC	5 cut(s)	85, 92, 236, 638, 773
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	326
Hin1II	CATG	6 cut(s)	109, 185, 331, 338, 572, 752
HindIII	AAGCTT	2 cut(s)	110, 431
HinfI	GANTC	2 cut(s)	370, 589
HphI	GGTGA	2 cut(s)	71, 584
Hpy166II	GTNNAC	1 cut(s)	806
Hpy188I	TCNGA	6 cut(s)	16, 193, 644, 655, 833, 856
Hpy188III	TCNNGA	4 cut(s)	374, 396, 593, 749
Hpy8I	GTNNAC	1 cut(s)	806
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	2 cut(s)	440, 869
HpyCH4V	TGCA	5 cut(s)	59, 64, 444, 568, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 323, 476, 772
HpyF3I	CTNAG	8 cut(s)	171, 311, 459, 641, 693, 708, 779, 903
HpySE526I	ACGT	2 cut(s)	440, 869
Hsp92II	CATG	6 cut(s)	109, 185, 331, 338, 572, 752
KpnI	GGTACC	1 cut(s)	351
Ksp22I	TGATCA	2 cut(s)	304, 361
Kzo9I	GATC	5 cut(s)	304, 361, 385, 418, 451
Lsp1109I	GCAGC	5 cut(s)	96, 103, 247, 649, 784
LweI	GCATC	4 cut(s)	73, 157, 595, 847
MaeI	CTAG	4 cut(s)	318, 530, 609, 767
MaeII	ACGT	2 cut(s)	440, 869
MaeIII	GTNAC	3 cut(s)	77, 145, 628
MalI	GATC	5 cut(s)	306, 363, 387, 420, 453
MboI	GATC	5 cut(s)	304, 361, 385, 418, 451
MboII	GAAGA	8 cut(s)	380, 587, 635, 657, 727, 737, 824, 891
MfeI	CAATTG	1 cut(s)	680
MflI	RGATCY	2 cut(s)	385, 418
MhlI	GDGCHC	2 cut(s)	54, 181
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	7 cut(s)	132, 162, 300, 493, 562, 680, 893
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	6 cut(s)	370, 507, 526, 669, 678, 732
Mox20I	TGGCCA	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	649
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	5 cut(s)	207, 245, 423, 497, 510
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	94
MspCI	CTTAAG	2 cut(s)	206, 509
MspR9I	CCNGG	2 cut(s)	261, 801
MunI	CAATTG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	261, 801
MwoI	GCNNNNNNNGC	4 cut(s)	176, 323, 476, 772
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	5 cut(s)	304, 361, 385, 418, 451
NlaIII	CATG	6 cut(s)	109, 185, 331, 338, 572, 752
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	338
PagI	TCATGA	1 cut(s)	748
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	649
PfeI	GAWTC	1 cut(s)	589
PkrI	GCNGC	5 cut(s)	86, 93, 237, 639, 774
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
Ppu21I	YACGTR	1 cut(s)	441
PsiI	TTATAA	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	259, 799
PspGI	CCWGG	2 cut(s)	259, 799
PspN4I	GGNNCC	1 cut(s)	349
PstNI	CAGNNNCTG	2 cut(s)	598, 778
PsuI	RGATCY	2 cut(s)	385, 418
PvuII	CAGCTG	1 cut(s)	94
RsaI	GTAC	4 cut(s)	74, 297, 349, 818
RsaNI	GTAC	4 cut(s)	73, 296, 348, 817
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	5 cut(s)	207, 245, 423, 497, 510
SatI	GCNGC	5 cut(s)	85, 92, 236, 638, 773
Sau3AI	GATC	5 cut(s)	304, 361, 385, 418, 451
ScaI	AGTACT	1 cut(s)	818
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	2 cut(s)	261, 801
SduI	GDGCHC	2 cut(s)	54, 181
SfaNI	GCATC	4 cut(s)	73, 157, 595, 847
SmlI	CTYRAG	4 cut(s)	206, 394, 485, 509
SmoI	CTYRAG	4 cut(s)	206, 394, 485, 509
Sse9I	AATT	7 cut(s)	132, 162, 300, 493, 562, 680, 893
SsiI	CCGC	3 cut(s)	82, 292, 449
SspMI	CTAG	4 cut(s)	318, 530, 609, 767
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	259, 799
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	2 cut(s)	443, 872
TaqI	TCGA	2 cut(s)	454, 674
TasI	AATT	7 cut(s)	132, 162, 300, 493, 562, 680, 893
TatI	WGTACW	2 cut(s)	72, 816
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	5 cut(s)	207, 245, 423, 497, 510
Tru9I	TTAA	5 cut(s)	207, 245, 423, 497, 510
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	5 cut(s)	84, 91, 235, 637, 772
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	7 cut(s)	122, 344, 594, 714, 737, 768, 873
TspGWI	ACGGA	1 cut(s)	538
Vha464I	CTTAAG	2 cut(s)	206, 509
XceI	RCATGY	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	649
XspI	CTAG	4 cut(s)	318, 530, 609, 767
ZrmI	AGTACT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.