Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018616.1

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 518

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018616.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

actcaaattgatcagcttagagctagtatggccatgaagagggctgaaatggtcactgatctcattgatcatttgactccaaaggagaaggatcttctctcaagattgaatcctgaaatagcagatcttaaagagaagcttattacatgcaaggcggatcgaactgaggtaagcctaagaaaggtagagctcgagactaatttaactacgaaccttaagaggcggaagcaagaattagaggcaatagtatcttctgcggaaactgataatttgcatggtgaagatgaaataaaggttcaggaactgaatgatgctagatttttggttgaagatgcaacagagcagctcagaagtgagggcaatgatttgctgttttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

126

Amino Acids

14.42

Weight (kDa)

4.85

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	155, 223, 257
AclWI	GGATC	2 cut(s)	99, 165
AcoI	YGGCCR	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	39, 181
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	109, 329
AluBI	AGCT	5 cut(s)	16, 23, 139, 190, 346
AluI	AGCT	5 cut(s)	16, 23, 139, 190, 346
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	99, 165
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	355
BclI	TGATCA	2 cut(s)	10, 67
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	24, 315
BfrI	CTTAAG	1 cut(s)	215
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	301, 322
BpuEI	CTTGAG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 181
Bse3DI	GCAATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	39, 181
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	156, 361
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	39, 181
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	6 cut(s)	10, 58, 67, 91, 124, 157
BspACI	CCGC	3 cut(s)	155, 223, 257
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	157, 360
BspPI	GGATC	2 cut(s)	99, 165
BspTI	CTTAAG	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	367
BssMI	GATC	6 cut(s)	10, 58, 67, 91, 124, 157
Bst6I	CTCTTC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	215
BstDEI	CTNAG	4 cut(s)	17, 165, 176, 347
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstKTI	GATC	6 cut(s)	13, 61, 70, 94, 127, 160
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	6 cut(s)	10, 58, 67, 91, 124, 157
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	91, 124
BstYI	RGATCY	2 cut(s)	91, 124
BsuRI	GGCC	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	304
CviAII	CATG	3 cut(s)	34, 147, 275
CviJI	RGCY	8 cut(s)	16, 23, 32, 44, 139, 174, 190, 346
CviKI_1	RGCY	8 cut(s)	16, 23, 32, 44, 139, 174, 190, 346
DdeI	CTNAG	4 cut(s)	17, 165, 176, 347
DpnI	GATC	6 cut(s)	12, 60, 69, 93, 126, 159
DpnII	GATC	6 cut(s)	10, 58, 67, 91, 124, 157
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	170, 238
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	3 cut(s)	37, 150, 278
FaiI	YATR	4 cut(s)	29, 35, 148, 276
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	3 cut(s)	33, 146, 274
FbaI	TGATCA	2 cut(s)	10, 67
Fnu4HI	GCNGC	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	344
FspBI	CTAG	2 cut(s)	24, 315
GluI	GCNGC	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	37, 150, 278
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	2 cut(s)	76, 109
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	350
Hpy188III	TCNNGA	4 cut(s)	102, 113, 193, 299
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	150, 274, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	4 cut(s)	17, 165, 176, 347
Hsp92II	CATG	3 cut(s)	37, 150, 278
Ksp22I	TGATCA	2 cut(s)	10, 67
Kzo9I	GATC	6 cut(s)	10, 58, 67, 91, 124, 157
LpnPI	CCDG	2 cut(s)	126, 284
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	301, 322
MaeI	CTAG	2 cut(s)	24, 315
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	6 cut(s)	12, 60, 69, 93, 126, 159
MboI	GATC	6 cut(s)	10, 58, 67, 91, 124, 157
MboII	GAAGA	5 cut(s)	49, 86, 243, 293, 341
MflI	RGATCY	2 cut(s)	91, 124
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	4 cut(s)	6, 199, 233, 268
MluNI	TGGCCA	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	5 cut(s)	33, 160, 213, 232, 349
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	4 cut(s)	129, 203, 216, 379
Msp20I	TGGCCA	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	6 cut(s)	10, 58, 67, 91, 124, 157
NlaIII	CATG	3 cut(s)	37, 150, 278
NmuCI	GTSAC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	150
PaeR7I	CTCGAG	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	345
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	91, 124
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	4 cut(s)	129, 203, 216, 379
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	6 cut(s)	10, 58, 67, 91, 124, 157
SchI	GAGTC	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	9 cut(s)	18, 25, 141, 171, 186, 192, 216, 297, 348
SfaNI	GCATC	2 cut(s)	301, 322
Sfr274I	CTCGAG	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	3 cut(s)	100, 191, 215
SmoI	CTYRAG	3 cut(s)	100, 191, 215
Sse9I	AATT	4 cut(s)	6, 199, 233, 268
SsiI	CCGC	3 cut(s)	155, 223, 257
SspMI	CTAG	2 cut(s)	24, 315
SstI	GAGCTC	1 cut(s)	192
TaqI	TCGA	2 cut(s)	160, 192
TasI	AATT	4 cut(s)	6, 199, 233, 268
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	4 cut(s)	129, 203, 216, 379
Tru9I	TTAA	4 cut(s)	129, 203, 216, 379
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	50, 300
TspRI	CASTG	1 cut(s)	61
Vha464I	CTTAAG	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	179
XceI	RCATGY	1 cut(s)	150
XhoI	CTCGAG	1 cut(s)	191
XspI	CTAG	2 cut(s)	24, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.