Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

1118794 .. 1127373

Gene Structure 8580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG008400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCATGAAGCATGTTGAAATGGGTACCGATCTCATTGATCATTTGACTCCAGAGGAGATGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTTAAAGTGAAGCTTATTACATGCAAGGCGGATCGAACTGAAACTGAAGCAAGAAAGGCAAAGCTGGAGACTAATTTAACTATGAACCTTAGGAGGCGAAAGCAAGAACTAGAGGTAATAATATCTTCCGTGGAAACTGATAATTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCTAGATTATTGGTTGAAGATGCAACGGAGCAGCTCAGAAGAGTTTCTGAAAGTATTGATGGTCAGTCGAGGCAATTGAGGAAAACTAAGGATGAAAAGACTAAGTTGAAGATGACCACTTATGAATGCAGAACTTGGAAGACGTACAACTATGAGAGGACACTTCAGGATGAAGCCAAACAGCTGGAGCAGCTACTGAGTAAAAGAAATATGTATCCTGCTAAACAAGAAGAGTACTCAAAGGAAGTCAGAGAACTGGGTGCATTGTCATCGGATGCTTTTGAAACAGCAGAGAGTGTAGTTTCACCGATGGCAACCCTTGAGGAAATCCTAACACGCCGCCCAATCGCCGCGGCGATCCACCTCCCTCAACCTGCCTCACTCGACACGCACTGCCGGTGTCCGGCTTTAGGTCAGTCTCGCCTCAACCTAATGGCCTTCTGCAAAGACTTCAATGCCCAACGCAGAAGCACAAACCCGATACTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

258

Amino Acids

29.69

Weight (kDa)

5.88

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AccII	CGCG	1 cut(s)	638
AciI	CCGC	4 cut(s)	128, 625, 636, 638
AclWI	GGATC	3 cut(s)	72, 138, 637
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	165, 434
AfaI	GTAC	3 cut(s)	28, 431, 521
AfiI	CCNNNNNNNGG	2 cut(s)	688, 695
AgsI	TTSAA	6 cut(s)	20, 82, 302, 394, 569, 739
AluBI	AGCT	5 cut(s)	112, 163, 319, 469, 478
AluI	AGCT	5 cut(s)	112, 163, 319, 469, 478
Alw26I	GTCTC	2 cut(s)	161, 708
AlwI	GGATC	3 cut(s)	72, 138, 637
AlwNI	CAGNNNCTG	2 cut(s)	277, 481
AoxI	GGCC	2 cut(s)	3, 720
ApeKI	GCWGC	2 cut(s)	316, 475
Asp700I	GAANNNNTTC	1 cut(s)	328
Asp718I	GGTACC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	263, 582
AxyI	CCTNAGG	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	2 cut(s)	328, 487
BccI	CCATC	3 cut(s)	55, 338, 589
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciVI	GTATCC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	161, 708
BfaI	CTAG	2 cut(s)	209, 288
BfuAI	ACCTGC	1 cut(s)	667
BfuI	GTATCC	1 cut(s)	510
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	5 cut(s)	317, 476, 625, 636, 639
BlsI	GCNGC	5 cut(s)	318, 477, 626, 637, 640
BmcAI	AGTACT	1 cut(s)	521
BmiI	GGNNCC	1 cut(s)	28
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	3 cut(s)	274, 295, 550
BmuI	ACTGGG	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	3 cut(s)	36, 185, 491
BpuEI	CTTGAG	2 cut(s)	58, 626
BsaJI	CCNNGG	2 cut(s)	228, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	688, 695
Bse118I	RCCGGY	1 cut(s)	681
Bse1I	ACTGG	1 cut(s)	546
Bse21I	CCTNAGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	228, 636
BseGI	GGATG	3 cut(s)	382, 460, 565
BseLI	CCNNNNNNNGG	2 cut(s)	688, 695
BseMII	CTCAG	2 cut(s)	334, 473
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	328, 487
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	2 cut(s)	5, 722
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	682, 689
BslI	CCNNNNNNNGG	2 cut(s)	688, 695
BsmAI	GTCTC	2 cut(s)	161, 708
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	2 cut(s)	5, 722
Bsp143I	GATC	6 cut(s)	31, 40, 64, 97, 130, 642
BspACI	CCGC	4 cut(s)	128, 625, 636, 638
BspANI	GGCC	2 cut(s)	5, 722
BspCNI	CTCAG	2 cut(s)	333, 474
BspFNI	CGCG	1 cut(s)	638
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	667
BspPI	GGATC	3 cut(s)	72, 138, 637
BspT107I	GGYRCC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	1 cut(s)	681
BssECI	CCNNGG	2 cut(s)	228, 636
BssMI	GATC	6 cut(s)	31, 40, 64, 97, 130, 642
Bst6I	CTCTTC	2 cut(s)	319, 510
BstDEI	CTNAG	5 cut(s)	188, 320, 372, 387, 482
BstDSI	CCRYGG	2 cut(s)	228, 636
BstF5I	GGATG	3 cut(s)	382, 460, 565
BstFNI	CGCG	1 cut(s)	638
BstKTI	GATC	6 cut(s)	34, 43, 67, 100, 133, 645
BstMAI	GTCTC	2 cut(s)	161, 708
BstMBI	GATC	6 cut(s)	31, 40, 64, 97, 130, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 475
BstNSI	RCATGY	2 cut(s)	17, 123
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	2 cut(s)	328, 487
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	2 cut(s)	64, 97
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	2 cut(s)	64, 97
Bsu36I	CCTNAGG	1 cut(s)	188
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	5, 722
BtgI	CCRYGG	2 cut(s)	228, 636
BtsCI	GGATG	3 cut(s)	382, 460, 565
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	667
CaiI	CAGNNNCTG	2 cut(s)	277, 481
Cfr10I	RCCGGY	1 cut(s)	681
Cfr42I	CCGCGG	1 cut(s)	639
Csp6I	GTAC	3 cut(s)	27, 430, 520
CviAII	CATG	5 cut(s)	7, 14, 120, 248, 774
CviJI	RGCY	9 cut(s)	5, 112, 163, 319, 461, 469, 478, 692, 722
CviKI_1	RGCY	9 cut(s)	5, 112, 163, 319, 461, 469, 478, 692, 722
CviQI	GTAC	3 cut(s)	27, 430, 520
DdeI	CTNAG	5 cut(s)	188, 320, 372, 387, 482
DpnI	GATC	6 cut(s)	33, 42, 66, 99, 132, 644
DpnII	GATC	6 cut(s)	31, 40, 64, 97, 130, 642
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	319, 510
EarI	CTCTTC	2 cut(s)	319, 510
EciI	GGCGGA	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	165, 434
Eco81I	CCTNAGG	1 cut(s)	188
FaeI	CATG	5 cut(s)	10, 17, 123, 251, 777
FaiI	YATR	9 cut(s)	8, 15, 121, 182, 249, 408, 438, 497, 775
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	5 cut(s)	6, 13, 119, 247, 773
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	5 cut(s)	317, 476, 625, 636, 639
FokI	GGATG	3 cut(s)	389, 467, 572
Fsp4HI	GCNGC	5 cut(s)	317, 476, 625, 636, 639
FspBI	CTAG	2 cut(s)	209, 288
GluI	GCNGC	5 cut(s)	317, 476, 625, 636, 639
GsuI	CTGGAG	3 cut(s)	36, 185, 491
HaeIII	GGCC	2 cut(s)	5, 722
HapII	CCGG	2 cut(s)	682, 689
Hin1II	CATG	5 cut(s)	10, 17, 123, 251, 777
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	49, 268
HpaII	CCGG	2 cut(s)	682, 689
HphI	GGTGA	2 cut(s)	263, 582
Hpy188I	TCNGA	4 cut(s)	323, 334, 536, 559
Hpy188III	TCNNGA	4 cut(s)	53, 75, 272, 452
HpyAV	CCTTC	1 cut(s)	733
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	6 cut(s)	123, 247, 308, 414, 548, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 475
HpyF3I	CTNAG	5 cut(s)	188, 320, 372, 387, 482
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	5 cut(s)	10, 17, 123, 251, 777
KpnI	GGTACC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	40
KspI	CCGCGG	1 cut(s)	639
Kzo9I	GATC	6 cut(s)	31, 40, 64, 97, 130, 642
LmnI	GCTCC	2 cut(s)	313, 472
Lsp1109I	GCAGC	2 cut(s)	328, 487
LweI	GCATC	3 cut(s)	274, 295, 550
MaeI	CTAG	2 cut(s)	209, 288
MaeII	ACGT	1 cut(s)	428
MalI	GATC	6 cut(s)	33, 42, 66, 99, 132, 644
MboI	GATC	6 cut(s)	31, 40, 64, 97, 130, 642
MboII	GAAGA	8 cut(s)	59, 216, 266, 314, 336, 406, 436, 527
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	2 cut(s)	64, 97
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	172, 241, 359
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	43
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	102, 176
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	469, 638
MspI	CCGG	2 cut(s)	682, 689
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	416
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	2 cut(s)	155, 475
NdeII	GATC	6 cut(s)	31, 40, 64, 97, 130, 642
NlaIII	CATG	5 cut(s)	10, 17, 123, 251, 777
NlaIV	GGNNCC	1 cut(s)	28
NspI	RCATGY	2 cut(s)	17, 123
PctI	GAATGC	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	318, 477, 626, 637, 640
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	28
PstNI	CAGNNNCTG	2 cut(s)	277, 481
PsuI	RGATCY	2 cut(s)	64, 97
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	3 cut(s)	28, 431, 521
RsaNI	GTAC	3 cut(s)	27, 430, 520
SacII	CCGCGG	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	102, 176
SatI	GCNGC	5 cut(s)	317, 476, 625, 636, 639
Sau3AI	GATC	6 cut(s)	31, 40, 64, 97, 130, 642
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	1 cut(s)	43
SfaNI	GCATC	3 cut(s)	274, 295, 550
Sfr303I	CCGCGG	1 cut(s)	639
SgrBI	CCGCGG	1 cut(s)	639
SmlI	CTYRAG	2 cut(s)	73, 605
SmoI	CTYRAG	2 cut(s)	73, 605
Sse9I	AATT	3 cut(s)	172, 241, 359
SsiI	CCGC	4 cut(s)	128, 625, 636, 638
SspMI	CTAG	2 cut(s)	209, 288
TaiI	ACGT	1 cut(s)	431
TaqI	TCGA	3 cut(s)	133, 353, 669
TasI	AATT	3 cut(s)	172, 241, 359
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	3 cut(s)	627, 638, 641
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	102, 176
Tru9I	TTAA	2 cut(s)	102, 176
TscAI	CASTG	1 cut(s)	683
TseI	GCWGC	2 cut(s)	316, 475
TspDTI	ATGAA	6 cut(s)	23, 197, 273, 393, 423, 471
TspGWI	ACGGA	2 cut(s)	217, 326
TspRI	CASTG	1 cut(s)	683
XceI	RCATGY	2 cut(s)	17, 123
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	2 cut(s)	209, 288
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.