Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008593.1

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

49587 .. 51104

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008593.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggcaacccttgaggaaatcctaacacgccgcccagtcgccgcggcgatccacctccctcaacccgacatgcaccgccggtgtccggctttagtgaccattacggtgttcaaggacaacactttcgaattcaccgtcaagtcgccgccggtgacgtggtatttgaagaaggcggcggggattgagtccgagagaggctggccggggcacgcggtggcgtcgacgctgtatcacattggtagcactgagagtctggtcgcttcccctgaccaccttgtcctcgccaaccttccggtggccaagggcattgggtcagccaccgcagcatcgcttgtcaagacaatcggtcgccgatcccgtcgtcagctcggtgaacgtgttcgctgtgatttcctgattgctatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

135

Amino Acids

14.74

Weight (kDa)

9.82

Isoelectric Point (pI)

73.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	221
AccII	CGCG	2 cut(s)	44, 212
AciI	CCGC	9 cut(s)	31, 42, 44, 76, 146, 173, 176, 212, 321
AclWI	GGATC	2 cut(s)	43, 348
AcoI	YGGCCR	2 cut(s)	200, 297
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	214
AfiI	CCNNNNNNNGG	2 cut(s)	85, 295
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	112, 166
AhdI	GACNNNNNGTC	1 cut(s)	345
AjiI	CACGTC	1 cut(s)	156
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
AlwI	GGATC	2 cut(s)	43, 348
AoxI	GGCC	2 cut(s)	200, 297
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	6 cut(s)	107, 120, 139, 145, 152, 177
Asp700I	GAANNNNTTC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	3 cut(s)	124, 163, 383
AsuII	TTCGAA	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	204
BisI	GCNGC	6 cut(s)	31, 42, 45, 146, 174, 324
BlsI	GCNGC	6 cut(s)	32, 43, 46, 147, 175, 325
Bme1390I	CCNGG	1 cut(s)	204
BmeRI	GACNNNNNGTC	1 cut(s)	345
BmgBI	CACGTC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	42, 203, 300
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 295
Bse118I	RCCGGY	2 cut(s)	78, 148
Bse1I	ACTGG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	42, 203, 300
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	2 cut(s)	85, 295
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	335
Bsh1236I	CGCG	2 cut(s)	44, 212
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	202, 299
BsiEI	CGRYCG	1 cut(s)	349
BsiSI	CCGG	5 cut(s)	79, 86, 149, 203, 293
BslI	CCNNNNNNNGG	2 cut(s)	85, 295
BsnI	GGCC	2 cut(s)	202, 299
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	48, 353
BspACI	CCGC	9 cut(s)	31, 42, 44, 76, 146, 173, 176, 212, 321
BspANI	GGCC	2 cut(s)	202, 299
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	2 cut(s)	44, 212
BspPI	GGATC	2 cut(s)	43, 348
BspT104I	TTCGAA	1 cut(s)	126
BsrFI	RCCGGY	2 cut(s)	78, 148
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	2 cut(s)	78, 148
BssECI	CCNNGG	3 cut(s)	42, 203, 300
BssMI	GATC	2 cut(s)	48, 353
BssNI	GRCGYC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	106, 136
BstACI	GRCGYC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	200, 210
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	42
BstFNI	CGCG	2 cut(s)	44, 212
BstKTI	GATC	2 cut(s)	51, 356
BstMBI	GATC	2 cut(s)	48, 353
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	210
BstUI	CGCG	2 cut(s)	44, 212
BstV1I	GCAGC	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	202, 299
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	200, 210
Cfr10I	RCCGGY	2 cut(s)	78, 148
Cfr42I	CCGCGG	1 cut(s)	45
CseI	GACGC	2 cut(s)	207, 232
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	6 cut(s)	89, 198, 202, 299, 317, 367
CviKI_1	RGCY	6 cut(s)	89, 198, 202, 299, 317, 367
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	50, 355
DpnII	GATC	2 cut(s)	48, 353
DraIII	CACNNNGTG	1 cut(s)	214
DrdI	GACNNNNNNGTC	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	345
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	2 cut(s)	200, 297
Eam1105I	GACNNNNNGTC	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	73
FaiI	YATR	1 cut(s)	71
FatI	CATG	1 cut(s)	69
FauI	CCCGC	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	6 cut(s)	31, 42, 45, 146, 174, 324
Fsp4HI	GCNGC	6 cut(s)	31, 42, 45, 146, 174, 324
GluI	GCNGC	6 cut(s)	31, 42, 45, 146, 174, 324
HaeIII	GGCC	2 cut(s)	202, 299
HapII	CCGG	5 cut(s)	79, 86, 149, 203, 293
HgaI	GACGC	2 cut(s)	207, 232
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	2 cut(s)	185, 250
HpaII	CCGG	5 cut(s)	79, 86, 149, 203, 293
HphI	GGTGA	3 cut(s)	124, 163, 383
Hpy166II	GTNNAC	2 cut(s)	222, 374
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	2 cut(s)	337, 394
Hpy8I	GTNNAC	2 cut(s)	222, 374
Hpy99I	CGWCG	3 cut(s)	223, 226, 363
HpyAV	CCTTC	2 cut(s)	163, 299
HpyCH4III	ACNGT	2 cut(s)	106, 136
HpyCH4IV	ACGT	2 cut(s)	155, 376
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	155, 376
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	73
KspI	CCGCGG	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	48, 353
LpnPI	CCDG	9 cut(s)	48, 92, 99, 162, 184, 216, 239, 279, 306
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	1 cut(s)	335
MaeII	ACGT	2 cut(s)	155, 376
MaeIII	GTNAC	2 cut(s)	94, 151
MalI	GATC	2 cut(s)	50, 355
MboI	GATC	2 cut(s)	48, 353
MboII	GAAGA	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	2 cut(s)	194, 259
MnlI	CCTC	5 cut(s)	7, 65, 69, 188, 290
Mox20I	TGGCCA	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	5 cut(s)	79, 86, 149, 203, 293
MspR9I	CCNGG	1 cut(s)	204
MvnI	CGCG	2 cut(s)	44, 212
MwoI	GCNNNNNNNGC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	2 cut(s)	48, 353
NlaIII	CATG	1 cut(s)	73
NmuCI	GTSAC	2 cut(s)	94, 151
NspI	RCATGY	1 cut(s)	73
NspV	TTCGAA	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 355
PdmI	GAANNNNTTC	1 cut(s)	378
PkrI	GCNGC	6 cut(s)	32, 43, 46, 147, 175, 325
PleI	GAGTC	2 cut(s)	193, 258
PpsI	GAGTC	2 cut(s)	193, 258
RseI	CAYNNNNRTG	1 cut(s)	104
SacII	CCGCGG	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	220
SatI	GCNGC	6 cut(s)	31, 42, 45, 146, 174, 324
Sau3AI	GATC	2 cut(s)	48, 353
SchI	GAGTC	2 cut(s)	194, 259
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	57, 158, 276, 291, 369, 379
SfaNI	GCATC	1 cut(s)	335
Sfr303I	CCGCGG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	126
SgrAI	CRCCGGYG	2 cut(s)	78, 148
SgrBI	CCGCGG	1 cut(s)	45
SgrDI	CGTCGACG	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	9 cut(s)	31, 42, 44, 76, 146, 173, 176, 212, 321
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	106, 136
TaiI	ACGT	2 cut(s)	158, 379
TaqI	TCGA	2 cut(s)	126, 221
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	128
TauI	GCSGC	5 cut(s)	33, 44, 47, 148, 176
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	94, 151
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	2 cut(s)	94, 151
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	73
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.