Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00777

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

13618 .. 14033

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCAACCCTTGAGGAAATCCTAACATGCCGCCCAATCGCCGCGGCGATCCACCTCCCTCGACCTGCCTCACCCGACATGCACCGCCGATGTCCGGCTTTAGGTCAATCCCGCCTCAACCTAATGAAGCACAAACCTGATACTCCCATGGCAGTGACCATTACGATGTTCAAGGACAACACTTTCAAATTCACCGTCAAGTCACCGCCGGTGACGTGGTATTTGAAGAAGGCGGCGGGGATTGAGTCCGAGAGAGGCTGGCTGGGGCACGCGGTGGCGTCGACGCTTCGGATTATTCGAACGGTGAACACGGTGGGGATTCAATTGGTGAAGGACTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

114

Amino Acids

12.72

Weight (kDa)

9.93

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	2 cut(s)	44, 272
AciI	CCGC	9 cut(s)	31, 42, 44, 85, 112, 206, 233, 236, 272
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	278
AdeI	CACNNNGTG	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	94, 101
AgsI	TTSAA	4 cut(s)	172, 187, 226, 323
AjiI	CACGTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	188
ArsI	GACNNNNNNTTYG	4 cut(s)	180, 205, 212, 237
AsuHPI	GGTGA	6 cut(s)	63, 184, 195, 223, 316, 340
AsuII	TTCGAA	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	4 cut(s)	31, 42, 45, 234
BlsI	GCNGC	4 cut(s)	32, 43, 46, 235
BmgBI	CACGTC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	42, 147
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 101
Bse118I	RCCGGY	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	42, 147
BseLI	CCNNNNNNNGG	2 cut(s)	94, 101
BseSI	GKGCMC	1 cut(s)	270
BseYI	CCCAGC	1 cut(s)	262
Bsh1236I	CGCG	2 cut(s)	44, 272
BsiSI	CCGG	2 cut(s)	95, 209
BslI	CCNNNNNNNGG	2 cut(s)	94, 101
Bsp119I	TTCGAA	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	48
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	9 cut(s)	31, 42, 44, 85, 112, 206, 233, 236, 272
BspFNI	CGCG	2 cut(s)	44, 272
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	43
BspT104I	TTCGAA	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	42, 147
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	3 cut(s)	196, 304, 313
BstACI	GRCGYC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	260, 270
BstDSI	CCRYGG	2 cut(s)	42, 147
BstFNI	CGCG	2 cut(s)	44, 272
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstNSI	RCATGY	2 cut(s)	30, 82
BstSLI	GKGCMC	1 cut(s)	270
BstUI	CGCG	2 cut(s)	44, 272
BtgI	CCRYGG	2 cut(s)	42, 147
BtrI	CACGTC	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	260, 270
Cfr10I	RCCGGY	1 cut(s)	208
Cfr42I	CCGCGG	1 cut(s)	45
CseI	GACGC	2 cut(s)	267, 292
CviAII	CATG	3 cut(s)	27, 79, 148
CviJI	RGCY	3 cut(s)	98, 258, 262
CviKI_1	RGCY	3 cut(s)	98, 258, 262
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DraIII	CACNNNGTG	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	30, 82, 151
FaiI	YATR	3 cut(s)	28, 80, 149
FatI	CATG	3 cut(s)	26, 78, 147
FauI	CCCGC	2 cut(s)	119, 229
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	4 cut(s)	31, 42, 45, 234
Fsp4HI	GCNGC	4 cut(s)	31, 42, 45, 234
GluI	GCNGC	4 cut(s)	31, 42, 45, 234
GsaI	CCCAGC	1 cut(s)	266
HapII	CCGG	2 cut(s)	95, 209
HgaI	GACGC	2 cut(s)	267, 292
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	3 cut(s)	30, 82, 151
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	245, 319
HpaII	CCGG	2 cut(s)	95, 209
HphI	GGTGA	6 cut(s)	63, 184, 195, 223, 316, 340
Hpy166II	GTNNAC	2 cut(s)	282, 307
Hpy188I	TCNGA	2 cut(s)	250, 291
Hpy8I	GTNNAC	2 cut(s)	282, 307
Hpy99I	CGWCG	2 cut(s)	283, 286
HpyAV	CCTTC	2 cut(s)	223, 325
HpyCH4III	ACNGT	3 cut(s)	196, 304, 313
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	30, 82, 151
KspI	CCGCGG	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	48
LpnPI	CCDG	6 cut(s)	78, 108, 150, 222, 244, 248
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	154, 201, 211
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	238
MfeI	CAATTG	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	2 cut(s)	188, 323
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	6 cut(s)	7, 65, 69, 79, 125, 248
MslI	CAYNNNNRTG	2 cut(s)	152, 164
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	95, 209
MunI	CAATTG	1 cut(s)	323
MvnI	CGCG	2 cut(s)	44, 272
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	3 cut(s)	30, 82, 151
NmuCI	GTSAC	3 cut(s)	154, 201, 211
NspI	RCATGY	2 cut(s)	30, 82
NspV	TTCGAA	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	32, 43, 46, 235
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	262
RseI	CAYNNNNRTG	2 cut(s)	152, 164
SacII	CCGCGG	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	280
SatI	GCNGC	4 cut(s)	31, 42, 45, 234
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	6 cut(s)	57, 67, 106, 123, 139, 218
Sfr303I	CCGCGG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	298
SgrAI	CRCCGGYG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	45
SgrDI	CGTCGACG	1 cut(s)	280
SmiMI	CAYNNNNRTG	2 cut(s)	152, 164
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	188, 323
SsiI	CCGC	9 cut(s)	31, 42, 44, 85, 112, 206, 233, 236, 272
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	196, 304, 313
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	61, 281, 298
TasI	AATT	2 cut(s)	188, 323
TauI	GCSGC	4 cut(s)	33, 44, 47, 236
TfiI	GAWTC	1 cut(s)	319
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	3 cut(s)	154, 201, 211
Tsp45I	GTSAC	3 cut(s)	154, 201, 211
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	159
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	2 cut(s)	30, 82
XmiI	GTMKAC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.