Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

6479414 .. 6482683

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG083100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGTGGCCAGCCGTTCCCTTTCCACTCAGCATCTTCGAAAACATAACTGCAATAGTCGTAAATAAAGATTGTATGAGAAGGAGAGAGATTGCTATTGCTCATGATCCAAGGATTTGGGCTCTCACCTTTGTATTCGTCTCTATCTCCTTCAGTATCAGTCGTTTGTGGACTCTTCAATCAAAGTATTGTGCGTGTATTCTTAATGCTACCAGAGGGGACTATCCTCTCGGTTCTAAGACTTTTTGGTTGGGTAAGATCAAGAAGCTGCAAAAAAAATTGGAGGCATTTGGCTGCACGGTCTCGTACAATTCGAGGAGCGAAAAGCCGTCTTTGTCGTACCTATTCTATTCCAATCAAGCTGTTCTTACACATGAAGCTTTTGTGGGTTTGGCTGAATTAGTAACAGGGAATTTGGAAGCATTCTTCTCAATCAACCGTTGCTTTCTGTTTGCAGATGAAAGACAAACTAGGCATACCAGAACTTTCCAAGAAGACTTCACTCACATTCCCGGATTCATGACTTCTCATCCTTTGAGTGAAGAATTTTTGGAGCAACGGCCTATAGCATTGAGCTTACACATAGATGAGAAAATTACAAAACTTGTAACTGAACAGCAGAAAGATGATGCTGAGCGAGCCCATGTCAAATCAGAACTGGAAGAGCTTGAGCAGGACATTGCGAATGCTAATAAGCAGCAAAGTTTAAGTTATAAAGCACCTGGGAATAAGGAAAAATCACTTGCTGATGTGCGGGTTCAAATTGATCAGCTTAGAGCTAAGGAGAAGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTTAAAGAGAAGCTTATTACATGCAAGGCGGATCGAACTGAGACTGAAGCAACAAAGGCAGAGCTTGAGACTAATTTAACTACAACCCTTAAGCGGCGAAAGCAAGAACTAGAGGCAATAATATCTTCTGTGGAAACTGATAGTTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCAACAGAGCAGCTCAGAAGAGTTTCTGAAAGTATTGATGGTCAGTTGAGGCAATTGAGGAAAACTAAGGATGAAAAGACTAAGTTGAAGAACTTGGAAGACAACTATGAGAGGACCCTTCAGGATGAAGCTAAACAGCTGGAGCAGGTACTGAGTAGAAGAAATATGTATCCTGCTAAACAAGAACAGTACTCAAAGAAAGTCAGCGAACTGGGTGCATTGTCATCACATATTTTGAAACGTATTACTGCTGTTCATACTTTGAATTATCTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

428

Amino Acids

49.28

Weight (kDa)

7.15

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
Acc36I	ACCTGC	1 cut(s)	1144
AciI	CCGC	3 cut(s)	751, 851, 916
AclWI	GGATC	3 cut(s)	98, 795, 861
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	409, 542
AcuI	CTGAAG	3 cut(s)	133, 888, 1112
AfaI	GTAC	4 cut(s)	305, 338, 1158, 1199
AfiI	CCNNNNNNNGG	1 cut(s)	915
AflII	CTTAAG	1 cut(s)	911
AgsI	TTSAA	6 cut(s)	176, 758, 805, 1096, 1246, 1273
AjnI	CCWGG	1 cut(s)	718
Alw26I	GTCTC	4 cut(s)	142, 304, 857, 884
AlwI	GGATC	3 cut(s)	98, 795, 861
AlwNI	CAGNNNCTG	2 cut(s)	1000, 1159
AoxI	GGCC	2 cut(s)	5, 557
ApeKI	GCWGC	4 cut(s)	265, 291, 694, 1018
ApoI	RAATTY	2 cut(s)	409, 542
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspS9I	GGNCC	1 cut(s)	1122
AsuC2I	CCSGG	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	115, 986
AsuII	TTCGAA	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	1122
BalI	TGGCCA	1 cut(s)	7
BanII	GRGCYC	2 cut(s)	121, 640
BbsI	GAAGAC	2 cut(s)	498, 1113
BbvI	GCAGC	4 cut(s)	252, 278, 706, 1030
BccI	CCATC	1 cut(s)	1040
BceAI	ACGGC	2 cut(s)	310, 572
BcgI	CGANNNNNNTGC	2 cut(s)	1205, 1239
BciT130I	CCWGG	1 cut(s)	720
BciVI	GTATCC	1 cut(s)	1188
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	4 cut(s)	142, 304, 857, 884
BfaI	CTAG	2 cut(s)	468, 932
BfmI	CTRYAG	1 cut(s)	561
BfrI	CTTAAG	1 cut(s)	911
BfuAI	ACCTGC	1 cut(s)	1144
BfuI	GTATCC	1 cut(s)	1188
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	5 cut(s)	267, 293, 696, 918, 1020
BmcAI	AGTACT	1 cut(s)	1199
Bme1390I	CCNGG	2 cut(s)	510, 720
Bme18I	GGWCC	1 cut(s)	1122
BmgT120I	GGNCC	1 cut(s)	1122
BmiI	GGNNCC	1 cut(s)	1124
BmrFI	CCNGG	2 cut(s)	510, 720
BmrI	ACTGGG	1 cut(s)	1229
BmsI	GCATC	3 cut(s)	39, 616, 997
BmuI	ACTGGG	1 cut(s)	1229
BpiI	GAAGAC	2 cut(s)	498, 1113
BpmI	CTGGAG	1 cut(s)	1169
Bpu10I	CCTNAGC	1 cut(s)	777
Bpu1102I	GCTNAGC	1 cut(s)	630
Bpu14I	TTCGAA	1 cut(s)	36
BpuEI	CTTGAG	3 cut(s)	686, 781, 908
BpuMI	CCSGG	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	107, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	915
Bse1I	ACTGG	2 cut(s)	660, 1224
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	107, 719
BseGI	GGATG	3 cut(s)	526, 1084, 1138
BseLI	CCNNNNNNNGG	1 cut(s)	915
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	5 cut(s)	40, 621, 852, 1036, 1151
BseNI	ACTGG	2 cut(s)	660, 1224
BseRI	GAGGAG	1 cut(s)	328
BseXI	GCAGC	4 cut(s)	252, 278, 706, 1030
BsgI	GTGCAG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	7, 559
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	915
BsmAI	GTCTC	4 cut(s)	142, 304, 857, 884
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	2 cut(s)	419, 688
BsnI	GGCC	2 cut(s)	7, 559
Bso31I	GGTCTC	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	121, 640
Bsp143I	GATC	6 cut(s)	103, 255, 763, 787, 820, 853
Bsp1720I	GCTNAGC	1 cut(s)	630
BspACI	CCGC	3 cut(s)	751, 851, 916
BspANI	GGCC	2 cut(s)	7, 559
BspCNI	CTCAG	5 cut(s)	39, 622, 853, 1035, 1152
BspHI	TCATGA	2 cut(s)	100, 516
BspLI	GGNNCC	1 cut(s)	1124
BspMI	ACCTGC	1 cut(s)	1144
BspPI	GGATC	3 cut(s)	98, 795, 861
BspQI	GCTCTTC	1 cut(s)	654
BspT104I	TTCGAA	1 cut(s)	36
BspTI	CTTAAG	1 cut(s)	911
BspTNI	GGTCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	660, 1224
BssECI	CCNNGG	2 cut(s)	107, 719
BssMI	GATC	6 cut(s)	103, 255, 763, 787, 820, 853
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	3 cut(s)	298, 437, 1197
Bst6I	CTCTTC	3 cut(s)	177, 654, 1021
BstAFI	CTTAAG	1 cut(s)	911
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	9, 636
BstF5I	GGATG	3 cut(s)	526, 1084, 1138
BstKTI	GATC	6 cut(s)	106, 258, 766, 790, 823, 856
BstMAI	GTCTC	4 cut(s)	142, 304, 857, 884
BstMBI	GATC	6 cut(s)	103, 255, 763, 787, 820, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 878, 922
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	1 cut(s)	846
BstSCI	CCNGG	2 cut(s)	508, 718
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	4 cut(s)	252, 278, 706, 1030
BstV2I	GAAGAC	2 cut(s)	498, 1113
BstX2I	RGATCY	2 cut(s)	787, 820
BstXI	CCANNNNNNTGG	1 cut(s)	114
BstYI	RGATCY	2 cut(s)	787, 820
BsuI	GTATCC	1 cut(s)	1188
BsuRI	GGCC	2 cut(s)	7, 559
BtsCI	GGATG	3 cut(s)	526, 1084, 1138
BveI	ACCTGC	1 cut(s)	1144
Cac8I	GCNNGC	2 cut(s)	9, 636
CaiI	CAGNNNCTG	2 cut(s)	1000, 1159
CciI	TCATGA	2 cut(s)	100, 516
Cfr13I	GGNCC	1 cut(s)	1122
Csp6I	GTAC	4 cut(s)	304, 337, 1157, 1198
CviAII	CATG	6 cut(s)	101, 371, 517, 641, 843, 971
CviQI	GTAC	4 cut(s)	304, 337, 1157, 1198
DpnI	GATC	6 cut(s)	105, 257, 765, 789, 822, 855
DpnII	GATC	6 cut(s)	103, 255, 763, 787, 820, 853
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	3 cut(s)	177, 654, 1021
EarI	CTCTTC	3 cut(s)	177, 654, 1021
EciI	GGCGGA	1 cut(s)	866
Eco130I	CCWWGG	1 cut(s)	107
Eco24I	GRGCYC	2 cut(s)	121, 640
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	1122
Eco57I	CTGAAG	3 cut(s)	133, 888, 1112
EcoO109I	RGGNCCY	1 cut(s)	1122
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	2 cut(s)	121, 640
ErhI	CCWWGG	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	6 cut(s)	104, 374, 520, 644, 846, 974
FalI	AAGNNNNNCTT	4 cut(s)	348, 380, 819, 851
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	6 cut(s)	100, 370, 516, 640, 842, 970
FauI	CCCGC	1 cut(s)	744
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
FokI	GGATG	3 cut(s)	513, 1091, 1145
FriOI	GRGCYC	2 cut(s)	121, 640
Fsp4HI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
FspBI	CTAG	2 cut(s)	468, 932
GluI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
GsuI	CTGGAG	1 cut(s)	1169
HaeIII	GGCC	2 cut(s)	7, 559
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	6 cut(s)	104, 374, 520, 644, 846, 974
HindIII	AAGCTT	2 cut(s)	375, 833
HinfI	GANTC	3 cut(s)	169, 513, 991
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	2 cut(s)	115, 986
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	3 cut(s)	652, 1025, 1036
Hpy188III	TCNNGA	6 cut(s)	101, 259, 517, 798, 995, 1130
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	4 cut(s)	72, 157, 778, 1136
HpyCH4III	ACNGT	3 cut(s)	298, 437, 1197
HpyCH4IV	ACGT	1 cut(s)	1249
HpyCH4V	TGCA	8 cut(s)	50, 268, 294, 452, 846, 970, 1010, 1226
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 878, 922
HpySE526I	ACGT	1 cut(s)	1249
Hsp92II	CATG	6 cut(s)	104, 374, 520, 644, 846, 974
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	6 cut(s)	103, 255, 763, 787, 820, 853
LguI	GCTCTTC	1 cut(s)	654
LmnI	GCTCC	3 cut(s)	315, 550, 1150
Lsp1109I	GCAGC	4 cut(s)	252, 278, 706, 1030
LweI	GCATC	3 cut(s)	39, 616, 997
MaeI	CTAG	2 cut(s)	468, 932
MaeII	ACGT	1 cut(s)	1249
MaeIII	GTNAC	2 cut(s)	400, 604
MalI	GATC	6 cut(s)	105, 257, 765, 789, 822, 855
MboI	GATC	6 cut(s)	103, 255, 763, 787, 820, 853
MfeI	CAATTG	1 cut(s)	1061
MflI	RGATCY	2 cut(s)	787, 820
MhlI	GDGCHC	2 cut(s)	121, 640
MlsI	TGGCCA	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	8 cut(s)	206, 234, 274, 306, 928, 1050, 1059, 1113
Mox20I	TGGCCA	1 cut(s)	7
MroXI	GAANNNNTTC	1 cut(s)	1030
MscI	TGGCCA	1 cut(s)	7
MseI	TTAA	5 cut(s)	201, 704, 825, 899, 912
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	7
MspA1I	CMGCKG	1 cut(s)	1147
MspCI	CTTAAG	1 cut(s)	911
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	2 cut(s)	510, 720
MunI	CAATTG	1 cut(s)	1061
Mva1269I	GAATGC	2 cut(s)	419, 688
MvaI	CCWGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	3 cut(s)	635, 878, 922
NciI	CCSGG	1 cut(s)	510
NdeII	GATC	6 cut(s)	103, 255, 763, 787, 820, 853
NlaIII	CATG	6 cut(s)	104, 374, 520, 644, 846, 974
NlaIV	GGNNCC	1 cut(s)	1124
NspI	RCATGY	1 cut(s)	846
NspV	TTCGAA	1 cut(s)	36
PagI	TCATGA	2 cut(s)	100, 516
PciSI	GCTCTTC	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PctI	GAATGC	2 cut(s)	419, 688
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	2 cut(s)	513, 991
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	5 cut(s)	267, 293, 696, 918, 1020
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	1122
PsiI	TTATAA	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	1122
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	1 cut(s)	1124
PspPI	GGNCC	1 cut(s)	1122
PspPPI	RGGWCCY	1 cut(s)	1122
PstNI	CAGNNNCTG	2 cut(s)	1000, 1159
PsuI	RGATCY	2 cut(s)	787, 820
PvuII	CAGCTG	1 cut(s)	1147
RsaI	GTAC	4 cut(s)	305, 338, 1158, 1199
RsaNI	GTAC	4 cut(s)	304, 337, 1157, 1198
RseI	CAYNNNNRTG	1 cut(s)	582
SapI	GCTCTTC	1 cut(s)	654
SaqAI	TTAA	5 cut(s)	201, 704, 825, 899, 912
SatI	GCNGC	5 cut(s)	266, 292, 695, 917, 1019
Sau3AI	GATC	6 cut(s)	103, 255, 763, 787, 820, 853
Sau96I	GGNCC	1 cut(s)	1122
ScaI	AGTACT	1 cut(s)	1199
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	510, 720
SduI	GDGCHC	2 cut(s)	121, 640
SfaNI	GCATC	3 cut(s)	39, 616, 997
SfcI	CTRYAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	36
SinI	GGWCC	1 cut(s)	1122
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	4 cut(s)	665, 796, 887, 911
SmoI	CTYRAG	4 cut(s)	665, 796, 887, 911
SsiI	CCGC	3 cut(s)	751, 851, 916
SspMI	CTAG	2 cut(s)	468, 932
StyD4I	CCNGG	2 cut(s)	508, 718
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	3 cut(s)	298, 437, 1197
TaiI	ACGT	1 cut(s)	1252
TaqI	TCGA	3 cut(s)	36, 311, 856
TatI	WGTACW	1 cut(s)	1197
TauI	GCSGC	1 cut(s)	919
TfiI	GAWTC	2 cut(s)	513, 991
Tru1I	TTAA	5 cut(s)	201, 704, 825, 899, 912
Tru9I	TTAA	5 cut(s)	201, 704, 825, 899, 912
TseI	GCWGC	4 cut(s)	265, 291, 694, 1018
TspDTI	ATGAA	7 cut(s)	387, 471, 505, 996, 1095, 1149, 1253
Vha464I	CTTAAG	1 cut(s)	911
VpaK11BI	GGWCC	1 cut(s)	1122
XapI	RAATTY	2 cut(s)	409, 542
XceI	RCATGY	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	2 cut(s)	468, 932
ZrmI	AGTACT	1 cut(s)	1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.