Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

1053555 .. 1053970

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCAACCCTTGAGGAAATCCTAATACTCCGCCCAGTCGCCGCGGCGATCCACCTCCCTCGACCCGCCCCACCCGACAGGCATCGCCGGTGTCCGGCTTTAGGTCAGTCTCGCCTCAACCTAATGAAGCACAAACCCGATACTCCCATGGCAGTGACCATTATGATGTTCAAGGACAATACTTTCGAATTCACCGTCAAGTCGCCGTTGGTGACATGGTATTTGAAGAAGGTGGCGGGGATTGAGTCCGAGAGAGGCTGGCCGGGGCATGCAGTGGCGTCGATGCTGTGGGTGAGGCACGTGAACATGGTGGGGATTCAATTGGTGAAGGACTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

113

Amino Acids

12.82

Weight (kDa)

9.8

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	44
AciI	CCGC	5 cut(s)	31, 42, 44, 66, 236
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	188
AcvI	CACGTG	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	94, 101
AgsI	TTSAA	3 cut(s)	172, 226, 320
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	188
ArsI	GACNNNNNNTTYG	6 cut(s)	167, 180, 199, 205, 212, 237
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	184, 223, 304, 337
AsuII	TTCGAA	1 cut(s)	186
BbrPI	CACGTG	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	261, 295
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	114
BisI	GCNGC	2 cut(s)	42, 45
BlsI	GCNGC	2 cut(s)	43, 46
Bme1390I	CCNGG	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	91, 273
BmuI	ACTGGG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	42, 147, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 101
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	35
BseDI	CCNNGG	3 cut(s)	42, 147, 263
BseLI	CCNNNNNNNGG	2 cut(s)	94, 101
BseNI	ACTGG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	88, 95, 263
BslI	CCNNNNNNNGG	2 cut(s)	94, 101
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	262
Bsp119I	TTCGAA	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	48
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	5 cut(s)	31, 42, 44, 66, 236
BspANI	GGCC	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	44
BspPI	GGATC	1 cut(s)	43
BspT104I	TTCGAA	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	3 cut(s)	42, 147, 263
BssMI	GATC	1 cut(s)	48
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	301
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	260, 270
BstDSI	CCRYGG	2 cut(s)	42, 147
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	2 cut(s)	42, 147
BtgZI	GCGATG	1 cut(s)	68
BtsI	GCAGTG	2 cut(s)	159, 279
BtsIMutI	CAGTG	2 cut(s)	159, 279
Cac8I	GCNNGC	2 cut(s)	260, 270
Cfr10I	RCCGGY	1 cut(s)	87
Cfr42I	CCGCGG	1 cut(s)	45
CseI	GACGC	1 cut(s)	267
CviAII	CATG	4 cut(s)	148, 216, 269, 307
CviJI	RGCY	3 cut(s)	98, 258, 262
CviKI_1	RGCY	3 cut(s)	98, 258, 262
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	147
Eco72I	CACGTG	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	151, 219, 272, 310
FaiI	YATR	5 cut(s)	149, 164, 217, 270, 308
FatI	CATG	4 cut(s)	147, 215, 268, 306
FauI	CCCGC	2 cut(s)	73, 229
Fnu4HI	GCNGC	2 cut(s)	42, 45
Fsp4HI	GCNGC	2 cut(s)	42, 45
GluI	GCNGC	2 cut(s)	42, 45
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	3 cut(s)	88, 95, 263
HgaI	GACGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	4 cut(s)	151, 219, 272, 310
HinfI	GANTC	2 cut(s)	245, 316
HpaII	CCGG	3 cut(s)	88, 95, 263
HphI	GGTGA	4 cut(s)	184, 223, 304, 337
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	223, 322
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	4 cut(s)	151, 219, 272, 310
KspI	CCGCGG	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	48
LpnPI	CCDG	6 cut(s)	48, 64, 101, 108, 244, 276
LweI	GCATC	2 cut(s)	91, 273
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	154, 211
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	238
MfeI	CAATTG	1 cut(s)	320
MluCI	AATT	2 cut(s)	188, 320
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	6 cut(s)	7, 65, 69, 125, 248, 288
MslI	CAYNNNNRTG	2 cut(s)	152, 164
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	3 cut(s)	88, 95, 263
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	44
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	4 cut(s)	151, 219, 272, 310
NmuCI	GTSAC	2 cut(s)	154, 211
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	186
PaeI	GCATGC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	43, 46
PleI	GAGTC	1 cut(s)	253
PmaCI	CACGTG	1 cut(s)	301
PmlI	CACGTG	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	301
PspCI	CACGTG	1 cut(s)	301
RseI	CAYNNNNRTG	2 cut(s)	152, 164
SacII	CCGCGG	1 cut(s)	45
SatI	GCNGC	2 cut(s)	42, 45
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	5 cut(s)	57, 106, 123, 234, 303
SfaNI	GCATC	2 cut(s)	91, 273
Sfr303I	CCGCGG	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	186
SgrAI	CRCCGGYG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	45
SmiMI	CAYNNNNRTG	2 cut(s)	152, 164
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	188, 320
SsiI	CCGC	5 cut(s)	31, 42, 44, 66, 236
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	3 cut(s)	61, 186, 281
TasI	AATT	2 cut(s)	188, 320
TauI	GCSGC	2 cut(s)	44, 47
TfiI	GAWTC	1 cut(s)	316
TscAI	CASTG	2 cut(s)	159, 279
TseFI	GTSAC	2 cut(s)	154, 211
Tsp45I	GTSAC	2 cut(s)	154, 211
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	159, 279
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.